Kocuria rhizophila DC2201

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria rhizophila DC2201 is a mesophilic, Gram-positive bacterium characterized by its cocci shape, which can be found in singles or tetrads. This organism is strictly aerobic, requiring oxygen for its metabolic processes. Kocuria rhizophila is non-motile, lacking flagella, and possesses a single membrane, indicating its structural simplicity relative to more complex bacterial forms. This species is noted for its free-living biotic relationship, suggesting that it does not rely on a host organism for survival and can thrive in various habitats. Importantly, Kocuria rhizophila DC2201 has been classified as non-pathogenic, indicating it does not cause disease in humans or other organisms. The genetic information of Kocuria rhizophila is cataloged under accession number NC_010617.1, which provides a reference for researchers studying its genome and related traits. An ecological insight derived from these characteristics is that Kocuria rhizophila's ability to thrive in multiple environments, combined with its non-pathogenic nature, suggests it may play a beneficial role in its ecosystems, possibly contributing to soil health and nutrient cycling without posing risks to other organisms.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria rhizophila
StrainDC2201

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Kocuria rhizophila DC2201
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Tetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Kocuria rhizophila DC2201, complete sequence.

Gene Summary

Adenine Count

388178 bp

Thymine Count

389690 bp

Guanine Count

960673 bp

Cytosine Count

958999 bp

Genome Length

2697540 bp

Protein-coding Genes

2319 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c biogenesis protein resbKRH_RS02375Not AvailablePositive533754 - 53544561442.4
c-type cytochrome biogenesis protein ccsbKRH_RS02380Not AvailablePositive535438 - 53655340307.7
pldc n-terminal domain-containing proteinKRH_RS02385Not AvailableNegative536701 - 53725220218.5
duf4229 domain-containing proteinKRH_RS02390Not AvailablePositive537541 - 53781910345.7
1,4-dihydroxy-2-naphthoate polyprenyltransferaseKRH_RS02395Not AvailableNegative537826 - 53871030761.1
2'-5' rna ligase family proteinKRH_RS02400Not AvailableNegative538968 - 53948018458.3
amp-binding proteinKRH_RS02405Not AvailableNegative539492 - 54104853316.4
1,4-dihydroxy-2-naphthoyl-coa synthaseKRH_RS02410Not AvailableNegative541057 - 54201335089.3
sulfite exporter taue/safe family proteinKRH_RS02415Not AvailablePositive542202 - 54296926890.9
atp-dependent helicase hrpbKRH_RS02420Not AvailablePositive543004 - 54577897093.4

Displaying genes 491 – 500 of 2378 in total

Metabolites

1961 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1961 metabolites

Health Effects

No health effects information available for this bacterium.