Limosilactobacillus fermentum IFO 3956

Gram-positiveRodNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Limosilactobacillus

Description

Limosilactobacillus fermentum IFO 3956 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This species is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. It is mesophilic, thriving within moderate temperature ranges. L. fermentum IFO 3956 does not exhibit mobility, as it lacks flagella, and possesses a single membrane structure. This bacterium is free-living and can inhabit multiple environments, indicating its versatile ecological adaptability. The organism is categorized under a single replicon, which suggests a streamlined genomic architecture, potentially facilitating efficient replication and metabolic processes. The presence of Limosilactobacillus fermentum IFO 3956 in diverse habitats underscores its ecological significance. Free-living bacteria like L. fermentum play crucial roles in their environments, including contributions to fermentation processes and nutrient cycling. They are known to interact with various microorganisms, potentially influencing microbial community dynamics. This adaptability and functional capacity highlight the importance of L. fermentum IFO 3956 in both natural ecosystems and potential applications in biotechnology, such as in fermentation and food production processes. Furthermore, studying its characteristics can provide insights into the ecological roles of lactic acid bacteria in various habitats.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLimosilactobacillus
SpeciesLimosilactobacillus fermentum
StrainIFO 3956

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Limosilactobacillus fermentum IFO 3956
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limosilactobacillus fermentum IFO 3956, complete sequence.

Gene Summary

Adenine Count

515364 bp

Thymine Count

503147 bp

Guanine Count

542108 bp

Cytosine Count

538065 bp

Genome Length

2098685 bp

Protein-coding Genes

2049 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna pseudouridine(38-40) synthase truaLAF_RS08455B2GDT8Negative1690281 - 169105728959.2
energy-coupling factor transporter transmembrane protein ecftLAF_RS08460D8IIP4Negative1691073 - 169187629828.9
energy-coupling factor transporter atpaseLAF_RS08465Q03PY6Negative1691869 - 169273530941.1
energy-coupling factor transporter atpaseLAF_RS08470Q03PY5Negative1692708 - 169353830068.3
50s ribosomal protein l17LAF_RS08475B2GDU2Negative1693735 - 169411514070.2
dna-directed rna polymerase subunit alphaLAF_RS08480A5VLH9Negative1694148 - 169509234753.2
30s ribosomal protein s11LAF_RS08485B2GDU4Negative1695175 - 169556413847.8
30s ribosomal protein s13LAF_RS08490B2GDU5Negative1695596 - 169596113549.6
50s ribosomal protein l36LAF_RS10960B2GDU6Negative1695987 - 16961034495.88
translation initiation factor if-1LAF_RS08495A5VLI3Negative1696141 - 16963598218.21

Displaying genes 1761 – 1770 of 2177 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

354 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 354 metabolites

Health Effects

No health effects information available for this bacterium.