Limosilactobacillus fermentum IFO 3956

Gram-positiveRodNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Limosilactobacillus

Description

Limosilactobacillus fermentum IFO 3956 is a Gram-positive, rod-shaped bacterium that typically arranges itself in chains. This species is classified as a facultative anaerobe, meaning it can grow in both the presence and absence of oxygen. It is mesophilic, thriving within moderate temperature ranges. L. fermentum IFO 3956 does not exhibit mobility, as it lacks flagella, and possesses a single membrane structure. This bacterium is free-living and can inhabit multiple environments, indicating its versatile ecological adaptability. The organism is categorized under a single replicon, which suggests a streamlined genomic architecture, potentially facilitating efficient replication and metabolic processes. The presence of Limosilactobacillus fermentum IFO 3956 in diverse habitats underscores its ecological significance. Free-living bacteria like L. fermentum play crucial roles in their environments, including contributions to fermentation processes and nutrient cycling. They are known to interact with various microorganisms, potentially influencing microbial community dynamics. This adaptability and functional capacity highlight the importance of L. fermentum IFO 3956 in both natural ecosystems and potential applications in biotechnology, such as in fermentation and food production processes. Furthermore, studying its characteristics can provide insights into the ecological roles of lactic acid bacteria in various habitats.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLimosilactobacillus
SpeciesLimosilactobacillus fermentum
StrainIFO 3956

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Limosilactobacillus fermentum IFO 3956
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Limosilactobacillus fermentum IFO 3956, complete sequence.

Gene Summary

Adenine Count

515364 bp

Thymine Count

503147 bp

Guanine Count

542108 bp

Cytosine Count

538065 bp

Genome Length

2098685 bp

Protein-coding Genes

2049 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hu family dna-binding proteinLAF_RS05140P0C0H3Positive1033069 - 10333449552.54
tetratricopeptide repeat proteinLAF_RS05145P54389Positive1033423 - 103468547745.4
phage integrase n-terminal sam-like domain-containing proteinLAF_RS05150Not AvailableNegative1034799 - 103565633017.3
cca trna nucleotidyltransferaseLAF_RS05155B2GC39Positive1035822 - 103702443184.2
abc-f family atp-binding cassette domain-containing proteinLAF_RS05160O06476Positive1037037 - 103892370679.8
thymidylate synthaseLAF_RS05165A5VJK9Positive1038989 - 103994836827.7
dihydrofolate reductaseLAF_RS05170P43791Positive1039960 - 104046318710.4
paqr family membrane homeostasis protein trhaLAF_RS05175P54176Negative1040443 - 104107223240.6
degv family proteinLAF_RS05180Q97QT7Positive1041239 - 104208130310.0
nad(p)-dependent oxidoreductaseLAF_RS05185P35136Negative1042215 - 104339343045.6

Displaying genes 1061 – 1070 of 2177 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

354 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 354 metabolites

Health Effects

No health effects information available for this bacterium.