Shewanella halifaxensis HAW-EB4

Gram-negativeBacilliNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella halifaxensis HAW-EB4 is a Gram-negative, psychrophilic bacterium characterized by its bacilli shape and tendency to occur in pairs or as singles. This organism thrives in marine sediment habitats and is classified as a heterotroph, utilizing organic compounds as its energy source. S. halifaxensis possesses a single replicon and features a unique double membrane structure, typical of Gram-negative bacteria. Notably, it has flagella, which are essential for motility; however, this particular strain is non-motile, indicating that it may rely on other means for movement within its aquatic environment. S. halifaxensis is facultatively anaerobic, allowing it to survive in varying oxygen conditions, which is advantageous in the dynamic marine sediment ecosystem. The optimal growth temperature for S. halifaxensis is around 10°C, aligning with its classification as a psychrophile, capable of thriving in colder environments. Importantly, this bacterium is non-pathogenic and does not form spores, suggesting a stable lifestyle in its ecological niche without the need for survival mechanisms associated with sporulation. Understanding the characteristics of S. halifaxensis HAW-EB4 enhances our knowledge of microbial diversity in marine sediments and their adaptations to cold environments. Its role as a free-living organism contributes to nutrient cycling and the overall health of marine ecosystems, highlighting the importance of psychrophilic bacteria in maintaining ecological balance in cold marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella halifaxensis
StrainHAW-EB4

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shewanella halifaxensis HAW-EB4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature10
Temperature rangePsychrophilic
HabitatMarine- Sediment
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella halifaxensis HAW-EB4


Gene Summary

Adenine Count

1451795 bp

Thymine Count

1444394 bp

Guanine Count

1166162 bp

Cytosine Count

1164566 bp

Genome Length

5226917 bp

Protein-coding Genes

4312 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1572286 - 1572298Not Available
Putative prophage integraseSHAL_RS06665Not AvailableNegative1580874 - 15810657405.48
Hypothetical proteinSHAL_RS06670Not AvailableNegative1581167 - 158235744136.4
AttlNot AvailableNot AvailablePositive1583457 - 1583474Not Available
AttlNot AvailableNot AvailablePositive1583537 - 1583551Not Available
hypothetical proteinSHAL_RS06675Not AvailablePositive1583596 - 158388610886.2
Site-specific integraseSHAL_RS06680Not AvailableNegative1583979 - 15841797384.25
AttrNot AvailableNot AvailablePositive1584418 - 1584432Not Available
Hypothetical protein gp32SHAL_RS06690Not AvailablePositive1584532 - 158577947236.3
Hypothetical protein gp33SHAL_RS06695Not AvailablePositive1585772 - 158635322278.4

Displaying genes 1 – 10 of 4524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1860 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1860 metabolites

Health Effects

No health effects information available for this bacterium.