Sorangium cellulosum So ce56

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum So ce56 is a Gram-negative bacterium notable for its unique properties and ecological significance. Characterized by a single replicon, this organism has been the subject of interest due to its genetic and metabolic capabilities. The complete genome of Sorangium cellulosum So ce56 can be accessed under the accession number NC_010162.1, which provides valuable information for research and application in various fields. This bacterium is known for its ability to degrade complex organic matter, making it an important player in carbon cycling within its environment. Its capacity for cellulose degradation has implications for biotechnological applications, particularly in the development of biofuels and bioremediation strategies. The metabolic versatility of Sorangium cellulosum So ce56 allows it to thrive in diverse ecological niches, contributing to soil health and nutrient recycling. In summary, Sorangium cellulosum So ce56 exemplifies an important Gram-negative bacterium with a single replicon, whose genomic data is accessible for further study. Its ecological role in decomposing organic materials underscores its potential utility in addressing environmental challenges. Further research into its metabolic pathways may yield insights into sustainable practices in agriculture and waste management.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
Class/taxonomy?kingdom=Pseudomonadati&level=klass&phylum=Myxococcota
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
StrainSo ce56

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum So ce56, complete sequence.

Gene Summary

Adenine Count

1871082 bp

Thymine Count

1859741 bp

Guanine Count

4653678 bp

Cytosine Count

4649278 bp

Genome Length

13033779 bp

Protein-coding Genes

9620 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4388 domain-containing proteinSCE_RS55975Not AvailableNegative11343842 - 1134546156533.0
diguanylate cyclase domain-containing proteinSCE_RS41770Not AvailableNegative11345514 - 1134740066305.7
diaminopimelate epimeraseSCE_RS41775Not AvailableNegative11347397 - 1134819428134.9
duf167 domain-containing proteinSCE_RS41780Not AvailableNegative11348191 - 1134852911785.3
hypothetical proteinSCE_RS41785Not AvailablePositive11348783 - 1134954426736.2
hypothetical proteinSCE_RS41790Not AvailableNegative11349578 - 1135019221274.4
cell division protein zapaSCE_RS41795Not AvailablePositive11350388 - 1135071711494.7
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeSCE_RS41800Not AvailablePositive11350779 - 1135194540591.8
dethiobiotin synthaseSCE_RS41805Not AvailablePositive11351990 - 1135264021349.0
abc transporter atp-binding proteinSCE_RS41810Not AvailableNegative11352943 - 1135359923204.8

Displaying genes 8451 – 8460 of 9695 in total

Metabolites

1753 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1753 metabolites

Health Effects

No health effects information available for this bacterium.