Shewanella sediminis HAW-EB3

Gram-negativeBacilliNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sediminis HAW-EB3 is a psychrophilic, Gram-negative bacterium primarily found in aquatic environments. It exhibits a bacilli shape and typically exists as single cells or in pairs. This organism is heterotrophic, relying on organic compounds for energy, and demonstrates facultative anaerobic growth, allowing it to thrive in both the presence and absence of oxygen. S. sediminis HAW-EB3 is characterized by the presence of flagella, contributing to its mobility, although it is noted to be non-motile under certain conditions. The bacterium has a unique cellular structure composed of two membranes and contains a single replicon. It does not form spores, indicating its strategy for survival and reproduction does not involve sporulation. This species is free-living and does not exhibit pathogenicity, making it an interesting subject for studying microbial ecology in its natural habitat. The optimal growth temperature for S. sediminis HAW-EB3 is around 10°C, which aligns with its classification as a psychrophile, capable of thriving in cold environments. Understanding the ecological role of S. sediminis HAW-EB3 can provide insights into the functioning of microbial communities in cold aquatic ecosystems, particularly regarding nutrient cycling and organic matter decomposition. Its non-pathogenic nature and unique adaptations to low temperatures emphasize the diversity of life forms that can exist in extreme conditions, contributing to the overall balance of aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sediminis
StrainHAW-EB3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shewanella sediminis HAW-EB3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature10
Temperature rangePsychrophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles- Pairs
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella sediminis HAW-EB3, complete sequence.

Gene Summary

Adenine Count

1484345 bp

Thymine Count

1490902 bp

Guanine Count

1269677 bp

Cytosine Count

1272750 bp

Genome Length

5517674 bp

Protein-coding Genes

4569 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nrfd/psrc family molybdoenzyme membrane anchor subunitSSED_RS02620Not AvailablePositive612681 - 61362834123.8
nitrous oxide reductase accessory protein noslSSED_RS02625Not AvailablePositive613800 - 61428818017.9
nitrous oxide reductase family maturation protein nosdSSED_RS02630Not AvailablePositive614295 - 61558447725.8
abc transporter atp-binding proteinSSED_RS02635Not AvailablePositive615611 - 61651332872.8
abc transporter permeaseSSED_RS02640Not AvailablePositive616515 - 61734530179.9
winged helix-turn-helix domain-containing proteinSSED_RS02645Not AvailablePositive617625 - 61890847997.6
nad(p)h-flavin reductaseSSED_RS02650Not AvailableNegative619041 - 61975127089.2
4-hydroxy-3-polyprenylbenzoate decarboxylaseSSED_RS02655Not AvailableNegative619832 - 62131355640.1
hypothetical proteinSSED_RS02660Not AvailablePositive621781 - 62227219588.7
hypothetical proteinSSED_RS02665Not AvailablePositive622689 - 6229469288.54

Displaying genes 551 – 560 of 4745 in total

Metabolites

1858 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1858 metabolites

Health Effects

No health effects information available for this bacterium.