Shewanella sediminis HAW-EB3

Gram-negativeBacilliNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella sediminis HAW-EB3 is a psychrophilic, Gram-negative bacterium primarily found in aquatic environments. It exhibits a bacilli shape and typically exists as single cells or in pairs. This organism is heterotrophic, relying on organic compounds for energy, and demonstrates facultative anaerobic growth, allowing it to thrive in both the presence and absence of oxygen. S. sediminis HAW-EB3 is characterized by the presence of flagella, contributing to its mobility, although it is noted to be non-motile under certain conditions. The bacterium has a unique cellular structure composed of two membranes and contains a single replicon. It does not form spores, indicating its strategy for survival and reproduction does not involve sporulation. This species is free-living and does not exhibit pathogenicity, making it an interesting subject for studying microbial ecology in its natural habitat. The optimal growth temperature for S. sediminis HAW-EB3 is around 10°C, which aligns with its classification as a psychrophile, capable of thriving in cold environments. Understanding the ecological role of S. sediminis HAW-EB3 can provide insights into the functioning of microbial communities in cold aquatic ecosystems, particularly regarding nutrient cycling and organic matter decomposition. Its non-pathogenic nature and unique adaptations to low temperatures emphasize the diversity of life forms that can exist in extreme conditions, contributing to the overall balance of aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sediminis
StrainHAW-EB3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shewanella sediminis HAW-EB3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature10
Temperature rangePsychrophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles- Pairs
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella sediminis HAW-EB3, complete sequence.

Gene Summary

Adenine Count

1484345 bp

Thymine Count

1490902 bp

Guanine Count

1269677 bp

Cytosine Count

1272750 bp

Genome Length

5517674 bp

Protein-coding Genes

4569 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arsc family reductaseSSED_RS12655Not AvailablePositive2938992 - 293933613285.9
succinyl-diaminopimelate desuccinylaseSSED_RS12660Not AvailablePositive2939333 - 294046340781.2
m15 family metallopeptidaseSSED_RS12665Not AvailablePositive2940463 - 294114025371.1
alpha/beta fold hydrolaseSSED_RS12670Not AvailablePositive2941189 - 294202531339.0
carbonate dehydrataseSSED_RS12675Not AvailablePositive2942233 - 294284723295.9
hypothetical proteinSSED_RS12680Not AvailableNegative2942844 - 29430628148.16
8-amino-3,8-dideoxy-alpha-d-manno-octulosonate transaminase kdnaSSED_RS12685Not AvailablePositive2943150 - 294433443642.1
3-deoxy-alpha-d-manno-octulosonate 8-oxidase kdnbSSED_RS12690Not AvailablePositive2944420 - 294549039326.4
8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase kdsbSSED_RS12695Not AvailablePositive2945609 - 294634627311.6
duf2897 family proteinSSED_RS12700Not AvailablePositive2946388 - 29466248733.4

Displaying genes 2561 – 2570 of 4745 in total

Metabolites

1858 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1858 metabolites

Health Effects

No health effects information available for this bacterium.