Shewanella sediminis HAW-EB3

Gram-negativeBacilliNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species.Shewanella sediminis HAW-EB3 was isolated from sediment taken at a depth of 215 meters from an unexploded-ordinance-dumping site 50 nautical miles from Halifax Harbor, in the Atlantic Ocean. This organism is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) anaerobically at 10 degrees Celsius . RDX is a member of a family of nitramine compounds which are used in the production of explosives. These chemicals are toxic and can be a major source of contamination of marine and freshwater sediments. Shewanella sediminis HAW-EB3 (NCIMB 14036, DSM 17055) is the type strain and the genome sequence will provide information on the production and regulation of proteins involved in the degradation of RDX. (HAMAP: SHESH)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella sediminis
StrainHAW-EB3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shewanella sediminis HAW-EB3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature10
Temperature rangePsychrophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles- Pairs
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella sediminis HAW-EB3


Gene Summary

Adenine Count

1484345 bp

Thymine Count

1490902 bp

Guanine Count

1269677 bp

Cytosine Count

1272750 bp

Genome Length

5517674 bp

Protein-coding Genes

4569 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+2640325 - 2640337Not Available
Coil containing proteinSSED_RS11470Not Available+2651696 - 265351968071.9
hypothetical proteinSSED_RS24845Not Available+2653504 - 26536716126.57
hypothetical proteinSSED_RS11475Not Available+2653901 - 26540987411.95
hypothetical proteinSSED_RS11480Not Available+2654110 - 265438810527.6
hypothetical proteinSSED_RS11485Not Available+2654370 - 265473212644.0
hypothetical proteinSSED_RS11490Not Available+2654733 - 265531420383.8
Structural protein p9SSED_RS11495Not Available+2655292 - 265599326173.4
Major capsid protein p2SSED_RS11500Not Available+2656343 - 265716129561.2
Structural protein p3SSED_RS11505Not Available+2657172 - 265747710663.0

Displaying genes 1 – 10 of 4745 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1823 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1823 metabolites