Parvibaculum lavamentivorans DS-1

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Parvibaculaceae

Genus

Parvibaculum

Description

Parvibaculum lavamentivorans DS-1 is a gram-negative, heterotrophic bacterium characterized by its bacilli shape and aerobic metabolism. This organism thrives in various habitats and is free-living, indicating it does not rely on a host for survival. It possesses a single replicon and is encapsulated by two membranes, typical of its classification within the Proteobacteria phylum. P. lavamentivorans DS-1 is known for its mobility, facilitated by the presence of flagella. Its mesophilic nature suggests it grows optimally at moderate temperatures, although specific temperature ranges are not detailed. Importantly, this bacterium is non-pathogenic, indicating it does not cause disease in humans or other organisms. The aerobic lifestyle of P. lavamentivorans DS-1 allows it to play a role in nutrient cycling within its diverse habitats. Its ability to utilize organic compounds as a source of energy enhances the decomposition processes in various ecosystems. This trait could contribute to maintaining ecological balance by breaking down organic matter and recycling nutrients. Overall, the characteristics of Parvibaculum lavamentivorans DS-1 emphasize its ecological role as a beneficial microorganism in the environment, supporting its free-living lifestyle and involvement in nutrient dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyParvibaculaceae
GenusParvibaculum
SpeciesParvibaculum lavamentivorans
StrainDS-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Parvibaculum lavamentivorans DS-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Parvibaculum lavamentivorans DS-1


Gene Summary

Adenine Count

725421 bp

Thymine Count

749338 bp

Guanine Count

1234135 bp

Cytosine Count

1205851 bp

Genome Length

3914745 bp

Protein-coding Genes

3665 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf5676 family membrane proteinPLAV_RS01780Not AvailablePositive370488 - 37076910331.9
copper-translocating p-type atpasePLAV_RS01785Not AvailablePositive370919 - 37286869087.1
mbl fold metallo-hydrolase rna specificity domain-containing proteinPLAV_RS01790Not AvailablePositive372925 - 37428349352.3
hypothetical proteinPLAV_RS01795Not AvailablePositive374295 - 37475017095.1
hypothetical proteinPLAV_RS01800Not AvailablePositive375029 - 37543314124.1
efflux rnd transporter periplasmic adaptor subunitPLAV_RS01805Not AvailablePositive375503 - 37705054671.1
efflux rnd transporter permease subunitPLAV_RS01810Not AvailablePositive377047 - 380181111692.0
rhodanese-like domain-containing proteinPLAV_RS01815Not AvailableNegative380279 - 38062312729.4
site-specific integrasePLAV_RS01820Not AvailableNegative380705 - 38187444604.7
pas domain s-box proteinPLAV_RS01825Not AvailablePositive382262 - 38407065159.0

Displaying genes 381 – 390 of 3734 in total

Metabolites

1745 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 1745 metabolites

Health Effects

No health effects information available for this bacterium.