Parvibaculum lavamentivorans DS-1

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Parvibaculaceae

Genus

Parvibaculum

Description

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) is an aerobic, non-motile, Gram-negative, short rod. It is motile when growing with acetate, octane or in complex medium. It is able to metabolize a wide range of anionic and non-ionic surfactants and utilizes all representatives of the two major classes of surfactants used in laundry products in Germany, anionics and non-ionics. The epithet "lavamentivorans" stands for "consuming (chemicals) used for washing". (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyParvibaculaceae
GenusParvibaculum
SpeciesParvibaculum lavamentivorans
StrainDS-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Parvibaculum lavamentivorans DS-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Parvibaculum lavamentivorans DS-1

NC_009719.1

Gene Summary

Adenine Count

725421 bp

Thymine Count

749338 bp

Guanine Count

1234135 bp

Cytosine Count

1205851 bp

Genome Length

3914745 bp

Protein-coding Genes

3665 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Large packaging proteinPLAV_RS04590Not Available+972249 - 97349945748.8
Portal proteinPLAV_RS04595Not Available+974469 - 97564443244.3
hypothetical proteinPLAV_RS04600Not Available-975625 - 97592110815.8
hypothetical proteinPLAV_RS04605Not Available+975967 - 9762219385.37
Putative prohead proteasePLAV_RS04610Not Available+976427 - 97707723707.8
Putative major capsid proteinPLAV_RS04615Not Available+977106 - 97841347669.4
Hypothetical proteinPLAV_RS04620Not Available+978419 - 97884715006.5
Dna packaging/head-tail-connectorPLAV_RS04625Not Available+978906 - 97946919992.3
Hypothetical proteinPLAV_RS04630Not Available+979466 - 97978311730.1
Tail proteinPLAV_RS04635Not Available+979780 - 98018114377.1

Displaying genes 1 – 10 of 3734 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1701 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 1701 metabolites