Xanthobacter autotrophicus Py2

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

Xanthobacter autotrophicus Py2 is a Gram-negative, facultative methylotroph characterized by its bacilli shape and mobility, facilitated by the presence of flagella. This organism thrives in multiple habitats and is classified as mesophilic, indicating it prefers moderate temperature ranges for optimal growth. Xanthobacter autotrophicus Py2 possesses two replicons and features a double-membrane structure, which is typical for Gram-negative bacteria. It is a free-living microorganism that does not exhibit pathogenicity, making it a non-harmful species within its ecological niche. As a methylotroph, Xanthobacter autotrophicus Py2 utilizes methanol and related compounds as its primary energy source. This metabolic capability allows it to play a significant role in carbon cycling, particularly in environments rich in methylated substrates. By metabolizing these compounds, Xanthobacter autotrophicus Py2 contributes to the reduction of greenhouse gases and the overall health of its habitat. In summary, the ecological significance of Xanthobacter autotrophicus Py2 lies in its ability to thrive in diverse environments while utilizing methyl compounds for energy, thus participating in essential biogeochemical cycles. This capability underscores the importance of understanding methylotrophic bacteria in efforts to manage and mitigate environmental impacts related to carbon emissions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter versatilis
StrainPy2

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthobacter autotrophicus Py2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNo

Genome Summary

Xanthobacter autotrophicus Py2


Gene Summary

Adenine Count

857264 bp

Thymine Count

870014 bp

Guanine Count

1812851 bp

Cytosine Count

1768805 bp

Genome Length

5308934 bp

Protein-coding Genes

4747 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polyribonucleotide nucleotidyltransferaseXAUT_RS01465Not AvailableNegative291508 - 29370078917.9
30s ribosomal protein s15XAUT_RS01470Not AvailableNegative293982 - 29425110228.4
abc transporter substrate-binding proteinXAUT_RS01475Not AvailableNegative294667 - 29626259082.6
trna pseudouridine(55) synthase trubXAUT_RS01480Not AvailableNegative296547 - 29763838897.4
30s ribosome-binding factor rbfaXAUT_RS01485Not AvailableNegative297635 - 29809016604.8
translation initiation factor if-2XAUT_RS01490Not AvailableNegative298401 - 301652113262.0
rna-binding proteinXAUT_RS01495Not AvailableNegative301649 - 30236825579.6
transcription termination factor nusaXAUT_RS01500Not AvailableNegative302397 - 30399258445.1
ribosome maturation factor rimpXAUT_RS01505Not AvailableNegative303992 - 30485230213.6
universal stress proteinXAUT_RS01510Not AvailableNegative305228 - 30573417777.6

Displaying genes 461 – 470 of 5237 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1769 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1769 metabolites

Health Effects

No health effects information available for this bacterium.