Phocaeicola vulgatus ATCC 8482

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus ATCC 8482 is a Gram-positive, anaerobic bacterium characterized by its rod shape and single-cell arrangement. This species is mesophilic, thriving within moderate temperature ranges. It possesses a unique cellular structure with two membranes and a single replicon, indicating a specific genetic organization. As a free-living organism, P. vulgatus is associated with host environments, suggesting it may play a significant role in the microbiota of various organisms, potentially influencing host health. The absence of mobility, evidenced by its lack of flagella, indicates that this species does not actively move towards or away from stimuli but relies on its environment for dispersal. The ecological implications of P. vulgatus are noteworthy. Given its anaerobic nature and association with host environments, it may contribute to the fermentation processes and metabolic activities within the gut microbiome, which can affect nutrient absorption and overall gut health. Its role in the microbiome could also influence host immune responses and maintain microbial diversity, underscoring the importance of such bacteria in ecological and health-related contexts. The accession number for this strain is NC_009614.1, which provides a reference for further genetic and functional studies. Understanding the characteristics of P. vulgatus may offer insights into its potential applications in probiotics or other biotechnological uses in supporting gut health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainATCC 8482

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus ATCC 8482
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus ATCC 8482, complete sequence.

Gene Summary

Adenine Count

1494665 bp

Thymine Count

1489581 bp

Guanine Count

1084578 bp

Cytosine Count

1094365 bp

Genome Length

5163189 bp

Protein-coding Genes

4074 genes

Non-Coding Genes

130 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oligogalacturonate lyase family proteinBVU_RS00850Not AvailableNegative255095 - 25642049976.5
ragb/susd family nutrient uptake outer membrane proteinBVU_RS00855Not AvailableNegative256636 - 25894586748.5
susc/raga family tonb-linked outer membrane proteinBVU_RS00860Not AvailableNegative258977 - 262270121805.0
tyrosine-type recombinase/integraseBVU_RS00865Not AvailableNegative262638 - 26381945990.3
susc/raga family tonb-linked outer membrane proteinBVU_RS00870Not AvailablePositive264108 - 26570357592.2
is982 family transposaseBVU_RS00875Not AvailableNegative265722 - 26662735030.2
helix-turn-helix transcriptional regulatorBVU_RS00880Not AvailablePositive266736 - 26829857881.2
ragb/susd family nutrient uptake outer membrane proteinBVU_RS00885Not AvailablePositive268330 - 27046879373.8
hypothetical proteinBVU_RS00890Not AvailablePositive270558 - 27087512135.9
alpha-l-rhamnosidase c-terminal domain-containing proteinBVU_RS00895Not AvailablePositive271119 - 27290066681.4

Displaying genes 201 – 210 of 4204 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.