Synechococcus sp. RCC307 genomic sequence.

Gram-negative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. RCC307 is a Gram-negative cyanobacterium characterized by its single replicon genomic structure. The complete genomic sequence of this organism is available under the accession number NC_009482.1. This species is notably equipped with flagella, which may play a role in its motility within its native habitat. RCC307 is found in the Beibu Gulf, an area that provides a unique ecological niche for cyanobacterial species. The presence of flagella suggests that Synechococcus sp. RCC307 may utilize these structures for movement, potentially aiding in its adaptation to the dynamic marine environment. The ability to navigate its surroundings could enhance its access to light and nutrients, which are critical for photosynthetic organisms. Through its genomic analysis, researchers may gain insights into the metabolic pathways and ecological interactions of Synechococcus sp. RCC307, contributing to a better understanding of the role this cyanobacterium plays in marine ecosystems. Cyanobacteria are known to be significant contributors to primary production in aquatic environments, influencing nutrient cycling and serving as a food source for various marine organisms. Thus, the genomic sequence of Synechococcus sp. RCC307 could provide valuable information for studies on marine biodiversity and ecological functions in the Beibu Gulf region.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. RCC307
Straingenomic sequence.

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Synechococcus sp. RCC307 genomic sequence.
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatBeibu Gulf
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Synechococcus sp. RCC307 genomic sequence.


Gene Summary

Adenine Count

436514 bp

Thymine Count

434684 bp

Guanine Count

676209 bp

Cytosine Count

677506 bp

Genome Length

2224914 bp

Protein-coding Genes

2409 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spoiid/lytb domain-containing proteinSYNRCC307_RS00305Not AvailablePositive54795 - 5648060438.9
glycosyltransferaseSYNRCC307_RS00310Not AvailablePositive56504 - 5786549764.3
dna polymerase iii subunit gamma/tauSYNRCC307_RS00315Not AvailableNegative57862 - 5967663574.3
lecithin retinol acyltransferase family proteinSYNRCC307_RS00320Not AvailableNegative59686 - 6033624069.8
atp-dependent protease atp-binding subunit clpxSYNRCC307_RS00325Not AvailableNegative60341 - 6169049347.1
atp-dependent clp endopeptidase proteolytic subunit clppSYNRCC307_RS00330Not AvailableNegative61775 - 6239822469.9
trigger factorSYNRCC307_RS00335Not AvailableNegative62419 - 6389453343.4
aspartate-semialdehyde dehydrogenaseSYNRCC307_RS00340Not AvailablePositive64049 - 6507736347.0
4-hydroxy-tetrahydrodipicolinate synthaseSYNRCC307_RS00345Not AvailablePositive65074 - 6597330791.2
ribonuclease jSYNRCC307_RS00350Not AvailablePositive66035 - 6789468441.9

Displaying genes 61 – 70 of 2458 in total

Metabolites

196 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001475erythronolide BC21H38O7Chemical structure of erythronolide BNot available
Average402.528Da
Monoisotopic402.2617536Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da

Displaying 1–10 of 196 metabolites

Health Effects

No health effects information available for this bacterium.