Dichelobacter nodosus VCS1703A

Gram-negativeBacilliNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cardiobacteriales

Family

Cardiobacteriaceae

Genus

Dichelobacter

Description

Dichelobacter nodosus VCS1703A is a Gram-negative, anaerobic bacillus that is primarily host-associated. This bacterium exists as single cells and does not exhibit mobility despite the presence of flagella. It is categorized as mesophilic, with an optimal growth temperature of 37°C, indicating its preference for moderate temperature ranges. D. nodosus has a unique cellular structure, characterized by two membranes and a single replicon. This structural configuration is typical of Gram-negative bacteria, which possess a complex cell envelope that can influence their interactions with the environment and host organisms. Despite its free-living biotic relationship, D. nodosus VCS1703A is not classified as pathogenic, suggesting that it does not cause disease in its hosts. This trait can have ecological implications, as non-pathogenic bacteria often play significant roles in maintaining microbial balance within their environments, contributing to processes such as nutrient cycling. The accessions for this strain are recorded under NC_009446.1, providing a reference for further genetic and genomic studies. Understanding the characteristics and ecological roles of D. nodosus can contribute to our knowledge of microbial communities and their interactions, particularly in relation to host organisms. This insight may be crucial for exploring the dynamics of microbial populations in various habitats, including those associated with agricultural settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCardiobacteriales
FamilyCardiobacteriaceae
GenusDichelobacter
SpeciesDichelobacter nodosus
StrainVCS1703A

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dichelobacter nodosus VCS1703A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Dichelobacter nodosus VCS1703A


Gene Summary

Adenine Count

384189 bp

Thymine Count

388348 bp

Guanine Count

304484 bp

Cytosine Count

312328 bp

Genome Length

1389350 bp

Protein-coding Genes

1270 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yqcc family proteinDNO_RS00365Not AvailablePositive78273 - 7861413088.9
dmt family transporterDNO_RS00370Not AvailableNegative78611 - 7948931668.3
ompa family proteinDNO_RS00375Not AvailablePositive79671 - 8034824146.4
riboflavin biosynthesis protein ribfDNO_RS00380Not AvailablePositive80494 - 8144435764.5
isoleucine--trna ligaseDNO_RS00385Not AvailablePositive81455 - 84229105351.0
signal peptidase iiDNO_RS00390Not AvailablePositive84229 - 8469317751.9
glutathione s-transferase family proteinDNO_RS00400Not AvailableNegative85225 - 8583622555.1
oxygen-independent coproporphyrinogen iii oxidaseDNO_RS00405Not AvailablePositive86117 - 8749352758.9
amidophosphoribosyltransferaseDNO_RS00410Not AvailablePositive87536 - 8905356361.5
class i sam-dependent methyltransferaseDNO_RS00415Not AvailablePositive89046 - 8975327001.6

Displaying genes 121 – 130 of 1354 in total

Metabolites

1671 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 1671 metabolites

Health Effects

No health effects information available for this bacterium.