Polynucleobacter asymbioticus QLW-P1DMWA-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Polynucleobacter

Description

Polynucleobacter asymbioticus QLW-P1DMWA-1 is a rod-shaped bacterium known for its ecological role in freshwater environments. This organism is characterized by having a single replicon, which is indicative of its streamlined genomic organization. The genomic information for Polynucleobacter asymbioticus QLW-P1DMWA-1 is available under the accession number NC_009379.1. This species is a member of the Polynucleobacter genus, which is often found in various aquatic habitats and is recognized for its potential contributions to the microbial community structure and function in these ecosystems. The rod shape suggests adaptations that may facilitate its motility and nutrient uptake in the aquatic milieu. In terms of ecological significance, Polynucleobacter asymbioticus QLW-P1DMWA-1 may play a role in nutrient cycling and organic matter decomposition in freshwater systems. Its presence can influence the microbial diversity and overall health of aquatic environments, potentially impacting food webs and ecosystem dynamics. Understanding the specific traits and ecological functions of such microorganisms is crucial for comprehending the complexities of freshwater ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPolynucleobacter
SpeciesPolynucleobacter asymbioticus
StrainQLW-P1DMWA-1

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polynucleobacter asymbioticus QLW-P1DMWA-1, complete sequence.

Gene Summary

Adenine Count

597189 bp

Thymine Count

594113 bp

Guanine Count

481889 bp

Cytosine Count

486299 bp

Genome Length

2159490 bp

Protein-coding Genes

2131 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2126 domain-containing proteinPNUC_RS06400Not AvailablePositive1272487 - 1275894129244.0
circularly permuted type 2 atp-grasp proteinPNUC_RS06405Not AvailablePositive1275930 - 127851896352.6
transglutaminase family proteinPNUC_RS06410Not AvailablePositive1278531 - 127945434467.2
sterol desaturase family proteinPNUC_RS06415Not AvailableNegative1279460 - 128028732070.4
tex family proteinPNUC_RS06420Not AvailableNegative1280317 - 128267186305.0
mfs transporterPNUC_RS06425Not AvailablePositive1282728 - 128390941708.6
translational gtpase typaPNUC_RS06430Not AvailableNegative1283969 - 128578667340.9
trna pseudouridine(55) synthase trubPNUC_RS06435Not AvailableNegative1285853 - 128676132865.6
30s ribosome-binding factor rbfaPNUC_RS06440Not AvailableNegative1286765 - 128713313908.6
translation initiation factor if-2PNUC_RS06445Not AvailableNegative1287154 - 128991698353.4

Displaying genes 1281 – 1290 of 2176 in total

Metabolites

1643 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 1643 metabolites

Health Effects

No health effects information available for this bacterium.