Herminiimonas arsenicoxydans

Gram-negativeBacilliMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herminiimonas

Description

Herminiimonas arsenicoxydans is a Gram-negative, heterotrophic bacterium that thrives in aquatic environments. This species exhibits a bacilli shape and possesses flagella, enabling mobility. It is classified as anaerobic, meaning it requires an oxygen-free environment for growth. The optimal growth temperature for H. arsenicoxydans is around 25°C, and it falls within the mesophilic temperature range. H. arsenicoxydans is characterized by having a single replicon and a double membrane structure. It is free-living and does not form spores, indicating a continuous mode of reproduction rather than a dormant survival strategy. Importantly, this bacterium is noted for its non-pathogenic nature, suggesting that it does not pose a threat to human health or other organisms. The ecological role of H. arsenicoxydans may be significant in aquatic ecosystems, particularly in environments where arsenic is present. Its ability to utilize arsenic compounds could indicate a role in biogeochemical cycling, potentially aiding in the detoxification of arsenic in contaminated waters. The presence of this bacterium in such habitats highlights the importance of microbial diversity in maintaining ecological balance and resilience in aquatic environments. Overall, Herminiimonas arsenicoxydans serves as a reminder of the complex interactions within ecosystems and the potential for specific microorganisms to contribute to environmental processes. The accession number for this organism is NC_009138.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerminiimonas
SpeciesHerminiimonas arsenicoxydans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herminiimonas arsenicoxydans
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature25
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Herminiimonas arsenicoxydans chromosome, complete sequence.

Gene Summary

Adenine Count

782896 bp

Thymine Count

782186 bp

Guanine Count

928572 bp

Cytosine Count

930653 bp

Genome Length

3424307 bp

Protein-coding Genes

3219 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucose-6-phosphate isomeraseHEAR_RS05015Not AvailableNegative1101832 - 110347560899.9
phosphogluconate dehydrataseHEAR_RS05020Not AvailablePositive1103791 - 110570468019.6
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseHEAR_RS05025Not AvailablePositive1105727 - 110634721320.3
abc-f family atpaseHEAR_RS05030Not AvailablePositive1106547 - 110814859404.6
quinolinate synthase nadaHEAR_RS05035Not AvailablePositive1108346 - 110948541129.7
carboxylating nicotinate-nucleotide diphosphorylaseHEAR_RS05040Not AvailablePositive1109482 - 111035430666.1
ribose-5-phosphate isomerase rpiaHEAR_RS05045Not AvailablePositive1110639 - 111131023387.6
bifunctional diguanylate cyclase/phosphodiesteraseHEAR_RS05050Not AvailableNegative1111338 - 111347080372.6
putative quinol monooxygenaseHEAR_RS05055Not AvailableNegative1113931 - 111426011513.8
hsp70 family proteinHEAR_RS05060Not AvailablePositive1114478 - 111572845726.3

Displaying genes 991 – 1000 of 3219 in total

Metabolites

1837 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 1837 metabolites

Health Effects

No health effects information available for this bacterium.