Herminiimonas arsenicoxydans

Gram-negativeBacilliMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herminiimonas

Description

Herminiimonas arsenicoxydans strain ULPAs1 (formerly called Caenibacter arsenoxydans ULPAs1, or Cenibacterium arsenoxydans) is an heterotrophic bacterium isolated from the activated sludge of an industrial water treatment plant contaminated with heavy metals such as arsenic, lead, copper, and silver. H. arsenicoxydans is the first fully characterized arsenic-metabolizing microorganism. It is phylogenetically associated with the beta subdivision of the Proteobacteria and belongs to the new genus Herminiimonas comprising bacteria isolated from diverse aquatic environments and anthropized ecosystems. H. arsenicoxydans possesses unsuspected mechanisms for coping with arsenic. Aside from multiple biochemical processes such as arsenic oxidation/reduction, oxidative stress resistance and As[III] extrusion (efflux), H. arsenicoxydans also exhibits positive chemotaxis and motility towards arsenic and metalloid scavenging by exopolysaccharides. These observations demonstrate the existence of a novel strategy to efficiently colonize arsenic-rich environments, which extends beyond oxidoreduction reactions. Genomic and experimental data demonstrated that this organism is capable of accommodating the presence of high concentrations of various toxic metals such as cadmium and zinc. However, except for arsenic, the resistance levels to toxic metals were much lower than those measured in the metallophilic R. metallidurans, which contains multiple plasmid-encoded genes, suggesting a specific physiological adaptation of H. arsenicoxydans toward arsenic. Three clusters of genes involved in resistance to arsenic were identified. Quantitative analysis of the transporter-encoding gene mRNA demonstrated that the resistance operons are either constitutively expressed or induced in the presence of As[III] in H. arsenicoxydans. H. arsenicoxydans can accommodate a wide range of oxygen. Indeed, the H. arsenicoxydans genome harbors multiple respiratory pathways, permitting microorganisms to grow under aerobic, microaerobic, and anoxic conditions. Remarkably, the versatile regulatory system of H. arsenicoxydans enables it to sense dynamic changes in arsenic concentration and to initiate motility and EPS synthesis for attachment to this metalloid. Recent results suggest that microbial biofilms are involved in the adsorption and immobilization of metals (such as Pb[II] and Cr[III]). The ability of H. arsenicoxydans to scavenge arsenic in an EPS matrix may be of prime importance in the context of bioremediation of contaminated environments, leading to the sequestration of this toxic metalloid. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerminiimonas
SpeciesHerminiimonas arsenicoxydans
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Herminiimonas arsenicoxydans
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature25
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Herminiimonas arsenicoxydans

Accession NumberNC_009138.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3219 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaHEAR_RS00005Not Available+278 - 166051833.0
dna polymerase iii subunit betaHEAR_RS00010Not Available+2006 - 311240832.4
dna topoisomerase (atp-hydrolyzing) subunit bHEAR_RS00015Not Available+3454 - 596192165.1
retron st85 family rna-directed dna polymeraseHEAR_RS00020Not Available-6021 - 704038353.0
retron st85 family effector proteinHEAR_RS00025Not Available-7189 - 809134172.8
hnh endonucleaseHEAR_RS00030Not Available-8189 - 898630059.2
restriction endonucleaseHEAR_RS16475Not Available-9016 - 993633467.8
hypothetical proteinHEAR_RS00040Not Available-10181 - 1045310380.3
hypothetical proteinHEAR_RS00045Not Available+10532 - 107177157.51
nadh:flavin oxidoreductase/nadh oxidaseHEAR_RS00050Not Available+10799 - 1191139976.9

Displaying genes 1 – 10 of 3219 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

153 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 153 metabolites