Staphylothermus marinus F1

CocciNon-motileAnaerobic

Kingdom

Thermoproteati

Phylum

Thermoproteota

Class

Thermoprotei

Order

Desulfurococcales

Family

Desulfurococcaceae

Genus

Staphylothermus

Description

Staphylothermus marinus F1 is a hyperthermophilic, anaerobic cocci that thrives in specialized habitats, notably at optimal temperatures around 92°C. This organism is characterized by its unique energy acquisition as a heterotroph, relying on organic compounds for growth. Staphylothermus marinus F1 is non-motile, lacking the ability to move independently, though it possesses flagella, which may play a role in its cellular functions. The organism has a singular replicon and is enveloped by a single membrane. As a free-living microbe, Staphylothermus marinus F1 does not exhibit pathogenicity, making it a non-threatening presence in its environment. Additionally, it does not form spores, which could be a factor in its reproductive strategy and environmental resilience. The ecological role of Staphylothermus marinus F1 is significant in environments where extreme temperatures and anaerobic conditions prevail. Its ability to thrive in these extreme conditions may contribute to nutrient cycling and the overall dynamics of microbial communities in high-temperature aquatic environments. Understanding the biology of such organisms can provide insights into their potential applications in biotechnology and their roles in natural ecosystems, especially in extreme habitats. The accession number for Staphylothermus marinus F1 is NC_009033.1, which can be used for further genomic studies.

Taxonomy

KingdomThermoproteati
PhylumThermoproteota
ClassThermoprotei
OrderDesulfurococcales
FamilyDesulfurococcaceae
GenusStaphylothermus
SpeciesStaphylothermus marinus
StrainF1

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature92
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Staphylothermus marinus F1


Gene Summary

Adenine Count

515199 bp

Thymine Count

494206 bp

Guanine Count

288188 bp

Cytosine Count

272892 bp

Genome Length

1570485 bp

Protein-coding Genes

1639 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
energy-coupling factor abc transporter permeaseSMAR_RS00010Not AvailablePositive1055 - 169922529.4
pdgle domain-containing proteinSMAR_RS00015Not AvailablePositive1706 - 199610477.2
energy-coupling factor transporter transmembrane component tSMAR_RS00020Not AvailablePositive1993 - 278730000.7
energy-coupling factor abc transporter atp-binding proteinSMAR_RS00025Not AvailablePositive2774 - 345125868.5
copg family ribbon-helix-helix proteinSMAR_RS00030Not AvailablePositive3514 - 391815234.1
carbohydrate kinase family proteinSMAR_RS00035Not AvailableNegative3934 - 486333591.7
nad(p)/fad-dependent oxidoreductaseSMAR_RS00040Not AvailableNegative5154 - 629342642.5
(2fe-2s)-binding proteinSMAR_RS00045Not AvailableNegative6300 - 658110837.6
atp-binding proteinSMAR_RS00050Not AvailableNegative6563 - 704818005.3
fad-dependent oxidoreductaseSMAR_RS00055Not AvailableNegative7038 - 852254457.2

Displaying genes 1 – 10 of 1684 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

33 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0003334aldehydo-D-ribose 5-phosphateC5H11O8PChemical structure of aldehydo-D-ribose 5-phosphateNot available
Average230.1098Da
Monoisotopic230.0191538Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003747CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolC52H83N3O13P2Chemical structure of CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerolNot available
Average1020.193Da
Monoisotopic1019.5412109Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da

Displaying 1–10 of 33 metabolites

Health Effects

No health effects information available for this bacterium.