Methylibium petroleiphilum PM1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Methylibium

Description

Methylibium petroleiphilum PM1 is a gram-negative, bacilli-shaped bacterium that thrives in aquatic environments. As a phototrophic methylotroph, it utilizes light and methanol as energy sources. This organism is facultatively anaerobic, allowing it to adapt to varying oxygen levels in its habitat. Methylibium petroleiphilum PM1 typically exists as single cells and is motile, equipped with flagella for movement. The optimal growth temperature for Methylibium petroleiphilum PM1 is 30°C, placing it within the mesophilic temperature range. This temperature preference suggests a potential for activity in moderate aquatic environments, such as lakes or rivers, where temperatures can fluctuate but generally remain conducive to growth. With a single replicon and a double membrane structure, the bacterium's cellular organization is characteristic of its classification. Importantly, Methylibium petroleiphilum PM1 is free-living and has no known pathogenicity, indicating its role in the ecosystem is likely beneficial rather than harmful. Its capacity to utilize methanol as a carbon source could play a significant role in biogeochemical cycling, particularly in environments where methanol is present. The presence of Methylibium petroleiphilum PM1 in aquatic ecosystems may contribute to the degradation of organic pollutants, thus supporting ecological balance and health. The accession number for this organism is NC_008825.1, which can be referenced for further genomic information.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusMethylibium
SpeciesMethylibium petroleiphilum
StrainPM1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylibium petroleiphilum PM1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhototroph- Methylotroph
PathogenicityNo

Genome Summary

Methylibium petroleiphilum PM1, complete sequence.

Gene Summary

Adenine Count

622413 bp

Thymine Count

623290 bp

Guanine Count

1396848 bp

Cytosine Count

1401644 bp

Genome Length

4044195 bp

Protein-coding Genes

3865 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
m48 family metallopeptidaseMPE_RS17045Not AvailableNegative3588290 - 358925235170.3
lysophospholipid acyltransferase family proteinMPE_RS17050Not AvailableNegative3589302 - 359006628812.6
d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphataseMPE_RS17055Not AvailableNegative3590063 - 359069522190.5
glycine--trna ligase subunit betaMPE_RS17060Not AvailableNegative3590697 - 359281475015.6
glycine--trna ligase subunit alphaMPE_RS17065Not AvailableNegative3592811 - 359376735856.4
cytochrome p450MPE_RS17070Not AvailableNegative3593911 - 359537454680.9
hypothetical proteinMPE_RS17075Not AvailableNegative3595435 - 359617227423.8
apolipoprotein n-acyltransferaseMPE_RS17080Not AvailableNegative3596262 - 359784255936.9
hlyc/corc family transporterMPE_RS17085Not AvailableNegative3597839 - 359874732910.2
cobw family gtp-binding proteinMPE_RS17090Not AvailablePositive3598923 - 359996638803.3

Displaying genes 3461 – 3470 of 3923 in total

Metabolites

1844 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 1844 metabolites

Health Effects

No health effects information available for this bacterium.