Methylibium petroleiphilum PM1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Methylibium

Description

Methylibium petroleiphilum PM1 is a gram-negative, bacilli-shaped bacterium that thrives in aquatic environments. As a phototrophic methylotroph, it utilizes light and methanol as energy sources. This organism is facultatively anaerobic, allowing it to adapt to varying oxygen levels in its habitat. Methylibium petroleiphilum PM1 typically exists as single cells and is motile, equipped with flagella for movement. The optimal growth temperature for Methylibium petroleiphilum PM1 is 30°C, placing it within the mesophilic temperature range. This temperature preference suggests a potential for activity in moderate aquatic environments, such as lakes or rivers, where temperatures can fluctuate but generally remain conducive to growth. With a single replicon and a double membrane structure, the bacterium's cellular organization is characteristic of its classification. Importantly, Methylibium petroleiphilum PM1 is free-living and has no known pathogenicity, indicating its role in the ecosystem is likely beneficial rather than harmful. Its capacity to utilize methanol as a carbon source could play a significant role in biogeochemical cycling, particularly in environments where methanol is present. The presence of Methylibium petroleiphilum PM1 in aquatic ecosystems may contribute to the degradation of organic pollutants, thus supporting ecological balance and health. The accession number for this organism is NC_008825.1, which can be referenced for further genomic information.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusMethylibium
SpeciesMethylibium petroleiphilum
StrainPM1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylibium petroleiphilum PM1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhototroph- Methylotroph
PathogenicityNo

Genome Summary

Methylibium petroleiphilum PM1, complete sequence.

Gene Summary

Adenine Count

622413 bp

Thymine Count

623290 bp

Guanine Count

1396848 bp

Cytosine Count

1401644 bp

Genome Length

4044195 bp

Protein-coding Genes

3865 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
calcium:proton antiporterMPE_RS04980Not AvailableNegative1058221 - 105928836318.5
diguanylate cyclaseMPE_RS04985Not AvailableNegative1059410 - 106089753676.6
atp-binding cassette domain-containing proteinMPE_RS04990Not AvailableNegative1061030 - 106280562426.6
hypothetical proteinMPE_RS04995Not AvailableNegative1062834 - 10630468062.39
aromatic ring-hydroxylating dioxygenase subunit alphaMPE_RS05000Not AvailablePositive1063365 - 106441439224.6
sigma-54-dependent fis family transcriptional regulatorMPE_RS24850Not AvailableNegative1064436 - 106614864168.8
pdr/vanb family oxidoreductaseMPE_RS05010Not AvailablePositive1066386 - 106735134160.4
aromatic ring-hydroxylating dioxygenase subunit alphaMPE_RS05015Not AvailablePositive1067383 - 106844439695.2
arac family transcriptional regulatorMPE_RS05020Not AvailableNegative1068464 - 106947737455.3
dsre family proteinMPE_RS05025Not AvailablePositive1069539 - 106990712853.7

Displaying genes 1011 – 1020 of 3923 in total

Metabolites

1844 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 1844 metabolites

Health Effects

No health effects information available for this bacterium.