Nitratidesulfovibrio vulgaris DP4

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Nitratidesulfovibrio

Description

Nitratidesulfovibrio vulgaris DP4 is a mesophilic, anaerobic, Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism is noted for its free-living biotic relationship and is capable of thriving in multiple habitats. It possesses a single replicon and is enclosed by two membranes, typical of Gram-negative bacteria. The optimal growth temperature for Nitratidesulfovibrio vulgaris DP4 is 25°C, which falls within the mesophilic temperature range, indicating its preference for moderate environments. The combination of its anaerobic requirement and motility suggests that it plays a role in specific ecological niches where oxygen is limited. Understanding the characteristics of Nitratidesulfovibrio vulgaris DP4 can provide insights into its ecological role, particularly in environments rich in sulfates and nitrates. Its ability to thrive in anaerobic conditions may contribute to biogeochemical cycling, especially in sedimentary environments where it can impact nutrient dynamics. The presence of this bacterium in various habitats highlights its potential importance in microbial communities and its contributions to processes such as sulfate reduction and nitrogen cycling. The accession number NC_008741.1 provides a genetic reference for further studies on its metabolic pathways and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusNitratidesulfovibrio
SpeciesNitratidesulfovibrio vulgaris
StrainDP4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Nitratidesulfovibrio vulgaris DP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nitratidesulfovibrio vulgaris DP4


Gene Summary

Adenine Count

33985 bp

Thymine Count

34125 bp

Guanine Count

64729 bp

Cytosine Count

65665 bp

Genome Length

198504 bp

Protein-coding Genes

147 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent fis family transcriptional regulatorDVUL_RS15130Not AvailablePositive21064 - 2261157352.5
autotransporter domain-containing proteinDVUL_RS15140Not AvailablePositive23558 - 2572374125.1
7tm diverse intracellular signaling domain-containing proteinDVUL_RS15145Not AvailablePositive25920 - 2797175541.9
response regulatorDVUL_RS15150Not AvailablePositive27958 - 2860523242.7
zinc transporter zuptDVUL_RS15155Not AvailablePositive28727 - 2956029568.4
crispr-associated endonuclease cas2DVUL_RS15160Not AvailableNegative32801 - 3309111235.5
type i-c crispr-associated endonuclease cas1cDVUL_RS15165Not AvailableNegative33096 - 3412738223.6
crispr-associated protein cas4DVUL_RS15170Not AvailableNegative34111 - 3474923695.4
type i-c crispr-associated protein cas7/csd2DVUL_RS15175Not AvailableNegative34751 - 3562332230.6
type i-c crispr-associated protein cas8c/csd1DVUL_RS15180Not AvailableNegative35626 - 3742566137.7

Displaying genes 11 – 20 of 147 in total

Metabolites

1605 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da

Displaying 1–10 of 1605 metabolites

Health Effects

No health effects information available for this bacterium.