Magnetococcus marinus MC-1

spheremicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Magnetococcia

Order

Magnetococcales

Family

Magnetococcaceae

Genus

Magnetococcus

Description

Magnetococcus marinus MC-1 is a Gram-negative, microaerophilic bacterium with a spherical shape, which thrives in the marine environment of the Pettaquamscutt Estuary in Rhode Island, America. This organism is characterized by the presence of flagella, facilitating its motility in aquatic habitats. It has a single replicon, which is indicative of its genome organization. M. marinus MC-1 exhibits mesophilic characteristics, with an optimal growth temperature of 25°C, suggesting that it is well adapted to the moderate temperature conditions typically found in its natural habitat. The combination of its unique traits allows M. marinus MC-1 to occupy a specific ecological niche within the estuarine environment, where it can utilize microaerobic conditions for growth. The ability of M. marinus MC-1 to navigate its environment, aided by flagella, may play a crucial role in its ecological interactions, particularly in sediment and water column dynamics. This bacterium may contribute to biogeochemical cycling in marine ecosystems, especially in areas with fluctuating oxygen levels. Understanding the ecological role of M. marinus MC-1 can provide insights into microbial community structure and function in marine environments, highlighting the importance of specific adaptations to niche survival. The organism is cataloged under the accession number NC_008576.1, which provides a reference for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassMagnetococcia
OrderMagnetococcales
FamilyMagnetococcaceae
GenusMagnetococcus
SpeciesMagnetococcus marinus
StrainMC-1

Profile

Physiology
Gram staining propertiesGram-negative
Shapesphere
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Magnetococcus marinus MC-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature25
Temperature rangemesophilic
HabitatPettaquamscutt Estuary, Rhode Island, America (Marine environment)
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Magnetococcus marinus MC-1


Gene Summary

Adenine Count

1086849 bp

Thymine Count

1076254 bp

Guanine Count

1262935 bp

Cytosine Count

1293543 bp

Genome Length

4719581 bp

Protein-coding Genes

3584 genes

Non-Coding Genes

286 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hd-gyp domain-containing proteinMMC1_RS01480Not AvailableNegative318313 - 31958747671.9
hypothetical proteinMMC1_RS01485Not AvailablePositive320031 - 32038413167.8
toxin-antitoxin system ywqk family antitoxinMMC1_RS01490Not AvailableNegative320472 - 32084914262.6
rubredoxinMMC1_RS01495Not AvailableNegative321021 - 3212428189.38
hypothetical proteinMMC1_RS01500Not AvailablePositive321914 - 32236316804.7
hypothetical proteinMMC1_RS01505Not AvailablePositive322581 - 32318621600.7
hypothetical proteinMMC1_RS01510Not AvailablePositive323330 - 3236059665.65
arsenate reductase (glutaredoxin)MMC1_RS01515Not AvailableNegative323709 - 32405913052.9
yqaa family proteinMMC1_RS01520Not AvailableNegative324075 - 32449715515.5
sumf1/egtb/pvdo family nonheme iron enzymeMMC1_RS19425Not AvailablePositive324717 - 32748597758.7

Displaying genes 691 – 700 of 3870 in total

Metabolites

1645 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1645 metabolites

Health Effects

No health effects information available for this bacterium.