Magnetococcus marinus MC-1

spheremicroaerophile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Magnetococcia

Order

Magnetococcales

Family

Magnetococcaceae

Genus

Magnetococcus

Description

Magnetococcus marinus MC-1 is a Gram-negative, microaerophilic bacterium with a spherical shape, which thrives in the marine environment of the Pettaquamscutt Estuary in Rhode Island, America. This organism is characterized by the presence of flagella, facilitating its motility in aquatic habitats. It has a single replicon, which is indicative of its genome organization. M. marinus MC-1 exhibits mesophilic characteristics, with an optimal growth temperature of 25°C, suggesting that it is well adapted to the moderate temperature conditions typically found in its natural habitat. The combination of its unique traits allows M. marinus MC-1 to occupy a specific ecological niche within the estuarine environment, where it can utilize microaerobic conditions for growth. The ability of M. marinus MC-1 to navigate its environment, aided by flagella, may play a crucial role in its ecological interactions, particularly in sediment and water column dynamics. This bacterium may contribute to biogeochemical cycling in marine ecosystems, especially in areas with fluctuating oxygen levels. Understanding the ecological role of M. marinus MC-1 can provide insights into microbial community structure and function in marine environments, highlighting the importance of specific adaptations to niche survival. The organism is cataloged under the accession number NC_008576.1, which provides a reference for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassMagnetococcia
OrderMagnetococcales
FamilyMagnetococcaceae
GenusMagnetococcus
SpeciesMagnetococcus marinus
StrainMC-1

Profile

Physiology
Gram staining propertiesGram-negative
Shapesphere
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Magnetococcus marinus MC-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperature25
Temperature rangemesophilic
HabitatPettaquamscutt Estuary, Rhode Island, America (Marine environment)
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Magnetococcus marinus MC-1, complete sequence.

Gene Summary

Adenine Count

1086849 bp

Thymine Count

1076254 bp

Guanine Count

1262935 bp

Cytosine Count

1293543 bp

Genome Length

4719581 bp

Protein-coding Genes

3584 genes

Non-Coding Genes

286 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cyclic nucleotide-binding domain-containing proteinMMC1_RS08840Not AvailableNegative2144069 - 214628883942.7
duf2892 domain-containing proteinMMC1_RS22155Not AvailablePositive2146487 - 214681912374.9
cobw family gtp-binding proteinMMC1_RS08850Not AvailablePositive2146856 - 214791138238.5
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive2148163 - 2148260Not Available
dna polymerase iii subunit gamma/tauMMC1_RS19930Not AvailablePositive2148347 - 215015566490.5
ybab/ebfc family nucleoid-associated proteinMMC1_RS08860Not AvailablePositive2150344 - 215064610830.4
recombination mediator recrMMC1_RS08865Not AvailablePositive2150656 - 215125821773.5
2-oxoacid:acceptor oxidoreductase family proteinMMC1_RS08870Not AvailablePositive2151478 - 215351173640.0
thiamine pyrophosphate-dependent enzymeMMC1_RS08875Not AvailablePositive2153572 - 215520960877.3
hypothetical proteinMMC1_RS08880Not AvailablePositive2155386 - 215617730119.0

Displaying genes 2061 – 2070 of 3870 in total

Metabolites

1645 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1645 metabolites

Health Effects

No health effects information available for this bacterium.