Pseudomonas aeruginosa UCBPP-PA14

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas aeruginosa is an important soil bacterium, with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. In addition to being able to colonize a wide variety of environments, Pesudomonas aeruginosa is also a pathogen with a wide host range. PA14, a clinical isolate from a human burn patient, has been demonstrated to cause pathogenesis in such diverse hosts as humans, mice, Caenorhabditis elegans, Drosophila melanogaster, and Arabidopsis thaliana. PA14 is also an excellent model for the study of pathogenesis and biofilm formation. Comparison of PA14 with a less pathogenic previously sequenced P.aeruginosa strain (PAO1; PSEAE) showed that genes that are present in PA14 but absent in PAO1 do not correlate with the virulence of these strains. The authors suggest that virulence in P.aeruginoas is the result of the combination of pathogenicity-related genes that interact in different fashions depending on the genetic background (adapted from http://ausubellab.mgh.harvard.edu/cgi-bin/pa14/annotation/start.cgi). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas aeruginosa
StrainUCBPP-PA14

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas aeruginosa UCBPP-PA14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Pseudomonas aeruginosa UCBPP-PA14


Gene Summary

Adenine Count

1102316 bp

Thymine Count

1101370 bp

Guanine Count

2166587 bp

Cytosine Count

2167364 bp

Genome Length

6537648 bp

Protein-coding Genes

5904 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ExcisionasePA14_RS03180Not Available-685467 - 68578111547.8
Hth-type transcriptional regulator prtrPA14_RS03185Not Available-685881 - 68665128143.5
Trar/dksa family transcriptional regulatorPA14_RS03190Not Available+687109 - 6873097269.58
hypothetical proteinPA14_RS03195Not Available+687357 - 68771613420.3
phage holin family proteinPA14_RS03200Not Available+688176 - 68852912069.9
Putative minor tail proteinPA14_RS03205Not Available+688551 - 68906618952.6
Putative baseplate assembly protein vPA14_RS03210Not Available+689063 - 68962019422.8
Putative baseplate assembly protein wPA14_RS03215Not Available+689773 - 69009911861.5
Baseplate assembly proteinPA14_RS03220Not Available+690096 - 69098331960.1
Tail protein iPA14_RS03225Not Available+690976 - 69150919965.8

Displaying genes 1 – 10 of 6042 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1147 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 1147 metabolites