Shewanella frigidimarina NCIMB 400

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella frigidimarina NCIMB 400 is a gram-negative, heterotrophic bacterium characterized by its bacilli shape and facultative anaerobic metabolism. This species exhibits a unique arrangement of cells, typically found in pairs or singles. It is motile, possessing flagella that facilitate its movement in various environments. The optimal growth temperature for Shewanella frigidimarina is 20°C, placing it within the mesophilic temperature range. This adaptability allows it to thrive in multiple habitats, contributing to its ecological versatility. The bacterium has a singular replicon and a double membrane structure, which is typical of gram-negative bacteria. Notably, Shewanella frigidimarina is non-pathogenic and does not form spores, indicating that it does not possess mechanisms for surviving extreme environmental stresses through sporulation. Instead, it lives freely in various ecosystems, potentially playing a role in nutrient cycling and organic matter decomposition. In summary, Shewanella frigidimarina NCIMB 400's heterotrophic lifestyle and ability to thrive in diverse habitats highlight its ecological significance. By breaking down organic materials in its environment, it may contribute to the health and stability of marine and other ecosystems, reinforcing the importance of microbial diversity in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella frigidimarina
StrainNCBM4000

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella frigidimarina NCIMB 400
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella frigidimarina NCIMB 400, complete sequence.

Gene Summary

Adenine Count

1414471 bp

Thymine Count

1415931 bp

Guanine Count

1008876 bp

Cytosine Count

1005979 bp

Genome Length

4845257 bp

Protein-coding Genes

4022 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gnat family n-acetyltransferaseSFRI_RS18535Not AvailablePositive4280546 - 428107019537.3
eal domain-containing proteinSFRI_RS18540Not AvailablePositive4281652 - 428350870177.8
hybrid-cluster nad(p)-dependent oxidoreductaseSFRI_RS18545Not AvailableNegative4283613 - 428482443326.8
hydroxylamine reductaseSFRI_RS18550Not AvailableNegative4284938 - 428659660222.4
duf4382 domain-containing proteinSFRI_RS18555Not AvailableNegative4286968 - 428795436055.4
duf3157 family proteinSFRI_RS18560Not AvailablePositive4288242 - 428893124704.6
duf5062 family proteinSFRI_RS18565Not AvailableNegative4289033 - 42892939886.17
m3 family metallopeptidaseSFRI_RS18570Not AvailablePositive4289579 - 429173579529.3
Trna-serNot AvailableNot AvailablePositive4291949 - 4292038Not Available
hypothetical proteinSFRI_RS18580Not AvailablePositive4292507 - 429362843058.4

Displaying genes 3711 – 3720 of 4180 in total

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 248 metabolites

Health Effects

No health effects information available for this bacterium.