Shewanella frigidimarina NCIMB 400

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella frigidimarina NCIMB 400 is a gram-negative, heterotrophic bacterium characterized by its bacilli shape and facultative anaerobic metabolism. This species exhibits a unique arrangement of cells, typically found in pairs or singles. It is motile, possessing flagella that facilitate its movement in various environments. The optimal growth temperature for Shewanella frigidimarina is 20°C, placing it within the mesophilic temperature range. This adaptability allows it to thrive in multiple habitats, contributing to its ecological versatility. The bacterium has a singular replicon and a double membrane structure, which is typical of gram-negative bacteria. Notably, Shewanella frigidimarina is non-pathogenic and does not form spores, indicating that it does not possess mechanisms for surviving extreme environmental stresses through sporulation. Instead, it lives freely in various ecosystems, potentially playing a role in nutrient cycling and organic matter decomposition. In summary, Shewanella frigidimarina NCIMB 400's heterotrophic lifestyle and ability to thrive in diverse habitats highlight its ecological significance. By breaking down organic materials in its environment, it may contribute to the health and stability of marine and other ecosystems, reinforcing the importance of microbial diversity in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella frigidimarina
StrainNCBM4000

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella frigidimarina NCIMB 400
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella frigidimarina NCIMB 400, complete sequence.

Gene Summary

Adenine Count

1414471 bp

Thymine Count

1415931 bp

Guanine Count

1008876 bp

Cytosine Count

1005979 bp

Genome Length

4845257 bp

Protein-coding Genes

4022 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr/acrr family transcriptional regulatorSFRI_RS04815Not AvailableNegative1096751 - 109733821797.2
coniferyl aldehyde dehydrogenaseSFRI_RS04820Not AvailableNegative1097501 - 109892252067.0
universal stress proteinSFRI_RS04825Not AvailablePositive1099180 - 109961115754.0
duf924 family proteinSFRI_RS04830Not AvailableNegative1099651 - 110021121205.2
ph domain-containing proteinSFRI_RS04835Not AvailableNegative1100216 - 110189563647.6
ph domain-containing proteinSFRI_RS21760Not AvailableNegative1101888 - 110261626114.6
winged helix-turn-helix domain-containing proteinSFRI_RS04845Not AvailablePositive1102870 - 110319612543.0
magnesium transporter cora family proteinSFRI_RS04850Not AvailablePositive1103238 - 110420637505.4
alpha-ketoglutarate-dependent dioxygenase alkb family proteinSFRI_RS04855Not AvailablePositive1104306 - 110489622608.3
bola family proteinSFRI_RS04860Not AvailablePositive1105169 - 110546811169.2

Displaying genes 1011 – 1020 of 4180 in total

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 248 metabolites

Health Effects

No health effects information available for this bacterium.