Shewanella frigidimarina NCIMB 400

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. . They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Shewanella frigidimarina strain NCIMB 400 is a marine bacterium isolated from the North Sea, off the coast of Aberdeen, UK, which exhibits a high degree of respiratory flexibility. Substrates that can be used as electron acceptors in include nitrate, nitrite, trimethylamine N-oxide, Fe(III) and Mn(IV). The organism is rich in c-type cytochromes, the synthesis of many of which appears to be increased during anaerobic growth with ferric irons present as respiratory electron acceptor. Biochemical studies of S. frigidimarina NCIMB 400 have revealed genes for two distinct soluble fumarate reductases and crystal structures of encoded proteins have been determined. This organism has also been a key target for the study of the biochemistry and genetic regulation of Fe(III) respiration. (HAMAP: SHEFN)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella frigidimarina
StrainNCBM4000

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella frigidimarina NCIMB 400
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella frigidimarina NCIMB 400


Gene Summary

Adenine Count

1414471 bp

Thymine Count

1415931 bp

Guanine Count

1008876 bp

Cytosine Count

1005979 bp

Genome Length

4845257 bp

Protein-coding Genes

4022 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1939712 - 1939723Not Available
AttlNot AvailableNot Available+1943470 - 1943482Not Available
IntegraseSFRI_RS08450Not Available+1952270 - 195348146121.7
hypothetical proteinSFRI_RS08455Not Available-1953478 - 19536998606.23
hypothetical proteinSFRI_RS21845Not Available-1953699 - 19538244794.84
hypothetical proteinSFRI_RS08460Not Available-1953821 - 19540638974.63
hypothetical proteinSFRI_RS08465Not Available-1954060 - 195436210851.4
Transcriptional regulatorSFRI_RS08470Not Available-1954363 - 19546269804.88
hypothetical proteinSFRI_RS08475Not Available-1954638 - 195497312857.5
hypothetical proteinSFRI_RS21655Not Available-1954982 - 19551436351.79

Displaying genes 1 – 10 of 4180 in total

Metabolites

209 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 209 metabolites