Trichodesmium erythraeum IMS101

Gram-negativeFilamentousMotileAerobic

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Oscillatoriales

Family

Microcoleaceae

Genus

Trichodesmium

Description

Trichodesmium erythraeum IMS101 is a filamentous, aerobic, gram-negative cyanobacterium found in aquatic habitats. This organism is characterized by its unique filamentous cell arrangement, which contributes to its ecological role in marine environments. T. erythraeum is mesophilic, thriving within a moderate temperature range, and possesses a single replicon and two membranes. Mobility in T. erythraeum is facilitated by the presence of flagella, allowing it to navigate within its aquatic environment. As a free-living organism, it does not engage in pathogenic relationships, making it a non-threatening species in its ecosystem. The ecological significance of T. erythraeum is highlighted by its role in nitrogen fixation, contributing to nutrient cycling in oceanic systems. Its ability to thrive in various aquatic conditions makes it a crucial player in marine biogeochemical processes. The accession number NC_008312.1 corresponds to its genomic data, providing researchers with a resource for further study into its genetic and metabolic pathways. Understanding the traits of T. erythraeum can deepen insights into the ecological dynamics of marine environments, particularly in relation to primary production and nutrient availability.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderOscillatoriales
FamilyMicrocoleaceae
GenusTrichodesmium
SpeciesTrichodesmium erythraeum
StrainIMS101

Profile

Physiology
Gram staining propertiesNegative
ShapeFilamentous
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Trichodesmium erythraeum IMS101
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Trichodesmium erythraeum IMS101, complete sequence.

Gene Summary

Adenine Count

2551359 bp

Thymine Count

2552602 bp

Guanine Count

1325668 bp

Cytosine Count

1320479 bp

Genome Length

7750108 bp

Protein-coding Genes

5402 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
p-loop atpase, sll1717 familyTERY_RS07410Not AvailablePositive2442907 - 2445636104777.0
2'-5' rna ligase family proteinTERY_RS07415Not AvailableNegative2446514 - 244707421327.8
ycii family proteinTERY_RS07420Not AvailablePositive2447092 - 24473589912.09
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive2447382 - 2447478Not Available
hypothetical proteinTERY_RS07425Not AvailablePositive2447515 - 244788613972.6
hypothetical proteinTERY_RS07430Not AvailablePositive2447955 - 244837116235.9
16s rrna (cytidine(1402)-2'-o)-methyltransferaseTERY_RS07435Not AvailablePositive2448737 - 244957631277.9
mur ligase family proteinTERY_RS07440Not AvailablePositive2450017 - 245127946618.5
extracellular solute-binding proteinTERY_RS07445Not AvailableNegative2451467 - 245274447946.4
type iv pilus assembly protein pilmTERY_RS07450Not AvailablePositive2452863 - 245396040379.4

Displaying genes 1661 – 1670 of 5449 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

117 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 1–10 of 117 metabolites

Health Effects

No health effects information available for this bacterium.