Rhodopseudomonas palustris BisB5

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris BisB5 is a gram-negative, facultatively anaerobic bacterium that exhibits a bacilli shape and is characterized by its ability to thrive in multiple habitats. As a phototroph, it utilizes light as an energy source, enabling it to perform photosynthesis. This organism is notable for its single-cell arrangement and possesses flagella, which confer mobility. R. palustris BisB5 is classified as mesophilic, with an optimal growth temperature of 25°C, although it can survive within a broader temperature range typically associated with mesophilic organisms. The bacterium contains one replicon and is surrounded by two membranes, indicative of its gram-negative status. In terms of ecological roles, R. palustris BisB5 is free-living and does not exhibit pathogenicity, suggesting its interactions are primarily beneficial within its environment rather than harmful. The ability to utilize light for energy while being adaptable to various habitats points to its potential importance in ecological nutrient cycling and carbon fixation processes. These traits underscore the significance of R. palustris BisB5 in microbial communities, particularly in environments where light is available but other energy sources may be limited. The organism's diverse metabolic capabilities may contribute to its resilience and adaptability in fluctuating environmental conditions. For further reference, this strain is cataloged under accession number NC_007958.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
StrainBisB5

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodopseudomonas palustris BisB5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhototroph
PathogenicityNo

Genome Summary

Rhodopseudomonas palustris BisB5


Gene Summary

Adenine Count

859367 bp

Thymine Count

862490 bp

Guanine Count

1590657 bp

Cytosine Count

1580203 bp

Genome Length

4892717 bp

Protein-coding Genes

4418 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna oxidative demethylase alkbRPD_RS18080Not AvailableNegative4007919 - 400857223735.4
ykgj family cysteine cluster proteinRPD_RS18085Not AvailablePositive4008926 - 400925211446.6
hypothetical proteinRPD_RS18090Not AvailableNegative4009266 - 400967614776.4
hypothetical proteinRPD_RS18095Not AvailablePositive4009907 - 401029313923.5
duf3307 domain-containing proteinRPD_RS18100Not AvailableNegative4010376 - 401078014849.5
duf6537 domain-containing proteinRPD_RS18105Not AvailableNegative4011106 - 401199332912.6
crp/fnr family transcriptional regulatorRPD_RS18110Not AvailableNegative4012014 - 401268825095.7
enoyl-coa hydratase/isomerase family proteinRPD_RS18115Not AvailablePositive4013020 - 401380227986.6
nitroreductaseRPD_RS18120Not AvailableNegative4013828 - 401452625218.9
acyl-coa dehydrogenaseRPD_RS18125Not AvailableNegative4014693 - 401593745051.6

Displaying genes 3661 – 3670 of 4494 in total

Metabolites

956 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 956 metabolites

Health Effects

No health effects information available for this bacterium.