Novosphingobium aromaticivorans DSM 12444

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium aromaticivorans DSM 12444 is a Gram-negative, aerobic bacterium characterized by its bacilli shape and motility, facilitated by the presence of flagella. This species thrives in a mesophilic temperature range, indicating an optimal growth temperature typically between 20°C and 45°C. The bacterium is free-living, meaning it exists independently rather than as a part of a symbiotic or pathogenic relationship. Genetically, Novosphingobium aromaticivorans is notable for possessing two replicons, which may contribute to its metabolic versatility. The organism is surrounded by two membranes, a characteristic feature of Gram-negative bacteria that plays a role in its interactions with the environment. This bacterium can inhabit multiple environments, suggesting an ecological adaptability that may allow it to exploit various organic compounds as sources of carbon and energy. Importantly, Novosphingobium aromaticivorans is not pathogenic, indicating a role in environmental processes rather than causing disease in humans or other organisms. The ecological insight drawn from the traits of Novosphingobium aromaticivorans is its potential contribution to bioremediation. Its ability to degrade aromatic compounds may play a significant role in the detoxification of contaminated environments, highlighting its importance in microbial ecology and environmental health. Accessions for this bacterium include NC_007794.1 and NC_009427.1, which provide genomic information for further research and exploration of its capabilities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium aromaticivorans
StrainDSM 12444

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Novosphingobium aromaticivorans DSM 12444
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Novosphingobium aromaticivorans DSM 12444, complete sequence.

Gene Summary

Adenine Count

622120 bp

Thymine Count

618992 bp

Guanine Count

1159382 bp

Cytosine Count

1161090 bp

Genome Length

3561584 bp

Protein-coding Genes

3326 genes

Non-Coding Genes

153 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iclr family transcriptional regulatorSARO_RS12110Not AvailableNegative2575480 - 257623527110.8
nuclear transport factor 2 family proteinSARO_RS12115Not AvailableNegative2576232 - 257662414407.1
cobalamin-independent methionine synthase ii family proteinSARO_RS12120Not AvailableNegative2576621 - 257775441536.4
tonb-dependent receptorSARO_RS12125Not AvailablePositive2578426 - 258110497099.1
glycosyl hydrolase family 95 catalytic domain-containing proteinSARO_RS12130Not AvailableNegative2581270 - 258374489145.9
n-acetylglucosamine-specific pts transporter subunit iibcSARO_RS12135Not AvailableNegative2583756 - 258544458084.1
phosphoenolpyruvate--protein phosphotransferaseSARO_RS12140Not AvailableNegative2585441 - 258795186315.3
n-acetylglucosamine-6-phosphate deacetylaseSARO_RS12145Not AvailableNegative2588004 - 258914639873.8
sis domain-containing proteinSARO_RS12150Not AvailableNegative2589143 - 259018336185.2
gntr family transcriptional regulatorSARO_RS12155Not AvailableNegative2590210 - 259095027349.7

Displaying genes 2581 – 2590 of 3911 in total

Metabolites

541 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 541 metabolites

Health Effects

No health effects information available for this bacterium.