Rhodopseudomonas palustris HaA2

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris HaA2 is a Gram-negative, facultatively phototrophic bacterium that exhibits a bacilli shape and is characterized by its single-cell arrangement. This organism is known to utilize light as an energy source while being capable of surviving in various habitats. It possesses flagella, which contribute to its mobility, enabling it to navigate through its environment effectively. R. palustris HaA2 thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. The bacterium has a single replicon and is enveloped by two membranes, a characteristic typical of Gram-negative bacteria. Notably, R. palustris HaA2 is a free-living organism with no known pathogenicity, meaning it does not cause disease in other organisms. This feature allows it to play a significant role in various ecological niches without detrimental effects on other species. The presence of R. palustris HaA2 in multiple habitats highlights its adaptability and ecological versatility. As a phototroph, it contributes to the cycling of nutrients and energy within its ecosystem, potentially impacting other microorganisms and contributing to overall ecosystem health. The ability of this bacterium to thrive in diverse environments underscores its importance in biogeochemical processes, particularly in environments where light is available for energy conversion.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
StrainHaA2

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodopseudomonas palustris HaA2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhototroph
PathogenicityNo

Genome Summary

Rhodopseudomonas palustris HaA2, complete sequence.

Gene Summary

Adenine Count

905975 bp

Thymine Count

904742 bp

Guanine Count

1757177 bp

Cytosine Count

1763762 bp

Genome Length

5331656 bp

Protein-coding Genes

4760 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-70 family rna polymerase sigma factorRPB_RS06985Not AvailableNegative1578460 - 157900519734.2
nepr family anti-sigma factorRPB_RS06990Not AvailableNegative1579005 - 15792268141.53
response regulatorRPB_RS06995Not AvailablePositive1579445 - 158025129302.2
hypothetical proteinRPB_RS07000Not AvailablePositive1580571 - 158102616115.5
ai-2e family transporterRPB_RS07005Not AvailableNegative1581162 - 158226839940.4
l,d-transpeptidaseRPB_RS07010Not AvailablePositive1582513 - 158327126965.2
duf2865 domain-containing proteinRPB_RS07015Not AvailablePositive1583301 - 158393621969.8
thivi_2564 family membrane proteinRPB_RS24410Not AvailablePositive1584114 - 15842695666.67
csbd family proteinRPB_RS07020Not AvailableNegative1584442 - 15846427909.13
malate synthase gRPB_RS07025Not AvailableNegative1584818 - 158699278447.9

Displaying genes 1431 – 1440 of 4829 in total

Metabolites

988 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 988 metabolites

Health Effects

No health effects information available for this bacterium.