Syntrophotalea carbinolica DSM 2380

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Syntrophotaleaceae

Genus

Syntrophotalea

Description

Syntrophotalea carbinolica DSM 2380 is a bacterium notable for its unique metabolic capabilities. It possesses a single replicon, indicating a streamlined genomic structure, which contributes to its efficiency in energy metabolism. The specific accession number for this organism is NC_007498.2, which allows for easy identification and retrieval of its genomic data from biological databases. One of the key traits of Syntrophotalea carbinolica is its ability to engage in syntrophic interactions, specifically in the degradation of organic compounds in anaerobic environments. This capability is significant in the context of microbial ecology, as it highlights the organism's role in the breakdown of complex organic matter, facilitating the overall process of anaerobic digestion. Syntrophic bacteria, such as Syntrophotalea carbinolica, are essential for the conversion of substrates into simpler compounds that can be utilized by other microorganisms in the community. This interdependence among microbial populations underscores the importance of syntrophic relationships in ecosystems, particularly in environments where organic waste is abundant. In summary, Syntrophotalea carbinolica DSM 2380, with its single replicon and specific metabolic abilities, exemplifies the intricate roles that certain bacteria play in biogeochemical cycles, particularly in anaerobic ecosystems. Its interactions with other microorganisms contribute to the degradation of organic materials, showcasing the importance of microbial collaboration in maintaining ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilySyntrophotaleaceae
GenusSyntrophotalea
SpeciesSyntrophotalea carbinolica
StrainDSM 2380

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Syntrophotalea carbinolica DSM 2380, complete sequence.

Gene Summary

Adenine Count

821021 bp

Thymine Count

824461 bp

Guanine Count

1012461 bp

Cytosine Count

1007950 bp

Genome Length

3665893 bp

Protein-coding Genes

3180 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
smc-scp complex subunit scpbPCAR_RS07335Not AvailablePositive1521560 - 152216222004.5
pseudouridine synthasePCAR_RS07340Not AvailablePositive1522362 - 152307226595.4
tetratricopeptide repeat proteinPCAR_RS17765Not AvailablePositive1523424 - 152595893381.9
exea family proteinPCAR_RS07350Not AvailablePositive1526024 - 152693534098.0
dna mismatch repair endonuclease mutlPCAR_RS07355Not AvailablePositive1527024 - 152891070043.9
trna (adenosine(37)-n6)-dimethylallyltransferase miaaPCAR_RS07360Not AvailablePositive1528910 - 152985435371.0
rna chaperone hfqPCAR_RS07365Not AvailablePositive1529867 - 15301008726.53
cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferasePCAR_RS07370Not AvailablePositive1530399 - 153095620343.5
lipopolysaccharide assembly protein lapbPCAR_RS17770Not AvailablePositive1531004 - 153182230114.5
pxxkw family cysteine-rich proteinPCAR_RS07380Not AvailableNegative1531886 - 153217010160.2

Displaying genes 1341 – 1350 of 3244 in total

Metabolites

1655 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 1655 metabolites

Health Effects

No health effects information available for this bacterium.