Nitrobacter winogradskyi Nb-255

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Nitrobacter

Description

Nitrobacter winogradskyi Nb-255 is a Gram-negative, facultatively anaerobic bacterium characterized by its bacilli shape and mobility, facilitated by the presence of flagella. This organism thrives in terrestrial habitats and is classified as a lithotroph, deriving its energy from inorganic compounds. It exhibits mesophilic temperature preferences, indicating an optimal growth range typical of moderate temperatures. N. winogradskyi Nb-255 is a free-living bacterium with a single replicon and possesses two membranes, a feature common among Gram-negative bacteria. Importantly, it does not exhibit pathogenicity, making it a non-harmful member of its ecosystem. The accession number for this strain is NC_007406.1, which serves as a reference for genomic studies and further research. From an ecological perspective, the free-living nature of Nitrobacter winogradskyi Nb-255 positions it as a critical player in nitrogen cycling within terrestrial environments. By oxidizing nitrite to nitrate, it contributes to soil fertility and nutrient availability for plants, thus playing a significant role in maintaining the health of terrestrial ecosystems. This bacterium exemplifies the importance of lithotrophic microorganisms in sustaining nutrient cycles and supporting biodiversity in various habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusNitrobacter
SpeciesNitrobacter winogradskyi
StrainNb-255

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Nitrobacter winogradskyi Nb-255
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceLithotroph
PathogenicityNo

Genome Summary

Nitrobacter winogradskyi Nb-255, complete sequence.

Gene Summary

Adenine Count

647647 bp

Thymine Count

643481 bp

Guanine Count

1052382 bp

Cytosine Count

1058583 bp

Genome Length

3402093 bp

Protein-coding Genes

3039 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
antibiotic biosynthesis monooxygenase family proteinNWI_RS09950Not AvailableNegative2092212 - 209251411664.6
transcriptional regulator ldtrNWI_RS09955Not AvailableNegative2092830 - 209334519787.9
duf6163 family proteinNWI_RS09960Not AvailableNegative2093752 - 209421616799.6
porphobilinogen synthaseNWI_RS09965Not AvailablePositive2094384 - 209544238523.2
rdd family proteinNWI_RS09970Not AvailablePositive2095589 - 209612819769.5
arginyltransferaseNWI_RS09975Not AvailablePositive2096210 - 209698329307.7
nramp family divalent metal transporterNWI_RS09980Not AvailableNegative2097014 - 209840248852.9
arsenate reductase (glutaredoxin)NWI_RS09985Not AvailableNegative2098570 - 209895914419.4
dna topoisomerase iv subunit aNWI_RS09990Not AvailableNegative2099085 - 210133483336.5
dna repair protein recoNWI_RS09995Not AvailableNegative2101385 - 210217328449.1

Displaying genes 1991 – 2000 of 3207 in total

Metabolites

1797 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 1797 metabolites

Health Effects

No health effects information available for this bacterium.