Thermobifida fusca YX

Gram-positiveBacilliMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Thermobifida

Description

Thermobifida fusca YX is a Gram-positive, thermophilic bacterium characterized by its bacilli shape and aerobic oxygen requirement. Notably, it possesses flagella, enabling mobility. This organism thrives optimally at a temperature of 50°C and exhibits a thermophilic temperature range, indicating its adaptation to high-temperature environments. Thermobifida fusca YX is free-living and does not exhibit pathogenicity, which suggests it plays a role in its ecosystem without causing disease in higher organisms. It has a single membrane and contains one replicon, which is indicative of its genetic organization. The ability to sporulate allows T. fusca YX to survive in adverse conditions, contributing to its resilience in diverse habitats. From an ecological perspective, the thermophilic nature of Thermobifida fusca YX may facilitate its involvement in the decomposition of organic matter in hot environments, such as composts or thermal sites, where it can contribute to nutrient cycling. Its free-living status further underscores its importance in microbial communities, as it may interact with other microorganisms and contribute to the overall stability and function of those ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyNocardiopsidaceae
GenusThermobifida
SpeciesThermobifida fusca
StrainYX

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Thermobifida fusca YX
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature50
Temperature rangeThermophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermobifida fusca YX, complete sequence.

Gene Summary

Adenine Count

592034 bp

Thymine Count

591593 bp

Guanine Count

1230436 bp

Cytosine Count

1228186 bp

Genome Length

3642249 bp

Protein-coding Genes

3100 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinTFU_RS16035Not AvailableNegative1319610 - 131993611999.3
hypothetical proteinTFU_RS05635Not AvailableNegative1319933 - 13201849068.48
scr1 family ta system antitoxin-like transcriptional regulatorTFU_RS05640Not AvailablePositive1320532 - 132084011436.7
scr1 family ta system antitoxin-like transcriptional regulatorTFU_RS16295Not AvailablePositive1320876 - 13210647538.08
duf397 domain-containing proteinTFU_RS15775Not AvailablePositive1321216 - 13214618769.35
hypothetical proteinTFU_RS05645Not AvailablePositive1321966 - 132288033284.5
sam-dependent methyltransferaseTFU_RS05650Not AvailablePositive1323232 - 132408330893.0
duf664 domain-containing proteinTFU_RS05655P14706Negative1324186 - 132447610792.8
rna-guided endonuclease tnpb family proteinTFU_RS05660Not AvailableNegative1324563 - 132575644522.7
is200/is605-like element istfu1 family transposaseTFU_RS05665Not AvailableNegative1325757 - 132615515308.8

Displaying genes 1151 – 1160 of 3165 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

390 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da

Displaying 1–10 of 390 metabolites

Health Effects

No health effects information available for this bacterium.