Candidatus Pelagibacter ubique HTCC1062

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Candidatus Pelagibacterales

Family

Candidatus Pelagibacteraceae

Genus

Candidatus Pelagibacter

Description

Candidatus Pelagibacter ubique HTCC1062 is a free-living, aerobic bacterium that primarily inhabits aquatic environments. This organism is classified as oligotrophic, indicating its ability to thrive in nutrient-poor conditions. Morphologically, it is characterized by a bacilli shape and is gram-negative. Notably, Candidatus Pelagibacter ubique HTCC1062 exists as single cells rather than in clusters. This bacterium has a mesophilic temperature range, which suggests a preference for moderate temperatures conducive to its growth and metabolic activities. It possesses a single replicon, which is indicative of its streamlined genome that is well-adapted to its oligotrophic lifestyle. The absence of mobility in Candidatus Pelagibacter ubique HTCC1062 suggests that it relies on water currents for distribution in its aquatic habitat. This bacterium plays a significant role in the microbial ecology of marine environments, particularly in nutrient cycling and energy flow, as it contributes to the degradation of organic matter and supports the overall health of aquatic ecosystems. The accession number for this organism is NC_007205.1, which can be used for further exploration of its genetic and genomic characteristics. Understanding the traits and ecological roles of Candidatus Pelagibacter ubique HTCC1062 enhances our appreciation of microbial diversity and function in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCandidatus Pelagibacterales
FamilyCandidatus Pelagibacteraceae
GenusCandidatus Pelagibacter
SpeciesCandidatus Pelagibacter communis
StrainHTCC1062

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceOligotroph
PathogenicityNot Available

Genome Summary

Candidatus Pelagibacter ubique HTCC1062, complete sequence.

Gene Summary

Adenine Count

462100 bp

Thymine Count

458179 bp

Guanine Count

195146 bp

Cytosine Count

193334 bp

Genome Length

1308759 bp

Protein-coding Genes

1345 genes

Non-Coding Genes

37 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigSAR11_RS02605Q4FNA2Negative504209 - 50493127682.1
aspartate kinaseSAR11_RS02610O67221Positive504997 - 50620844116.2
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseSAR11_RS02615Q4FNA0Positive506212 - 50731239738.2
peptide chain release factor 1SAR11_RS02620Q4FN99Positive507318 - 50839140415.9
peptide chain release factor n(5)-glutamine methyltransferaseSAR11_RS02625Q8K9W9Positive508393 - 50923532276.4
duf4167 domain-containing proteinSAR11_RS02630Not AvailablePositive509250 - 50972618173.2
peptidoglycan dd-metalloendopeptidase family proteinSAR11_RS02635P0AFT0Negative509729 - 51102749388.0
16s ribosomal rnaNot AvailableNot AvailablePositive511358 - 512832Not Available
Trna-ileNot AvailableNot AvailablePositive512931 - 513007Not Available
Trna-alaNot AvailableNot AvailablePositive513017 - 513092Not Available

Displaying genes 521 – 530 of 1382 in total

Metabolites

1741 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 1741 metabolites

Health Effects

No health effects information available for this bacterium.