Xanthomonas oryzae pv. oryzae KACC 10331

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae KACC 10331 is a Gram-negative, rod-shaped bacterium that serves as a pathogen of rice. This organism is classified as an aerobe, requiring oxygen for its metabolic processes. It possesses flagella, which contribute to its mobility, allowing it to move in its environment. In terms of its genetic structure, X. oryzae pv. oryzae KACC 10331 has a single replicon and is characterized by a double membrane system, typical of Gram-negative bacteria. It thrives in mesophilic temperature ranges, indicating that it prefers moderate temperatures for optimal growth. As a free-living organism, X. oryzae pv. oryzae interacts with its rice host in a biotic relationship that can lead to significant agricultural impacts. The bacterium is known for causing bacterial blight in rice, a disease that can severely affect crop yields. Understanding the traits of this pathogen, including its mobility and oxygen requirements, is crucial for developing effective management strategies to mitigate its impact on rice production. In summary, Xanthomonas oryzae pv. oryzae KACC 10331 is a notable pathogen with specific physiological traits that define its interaction with rice. Its ability to thrive in specific environmental conditions highlights the importance of monitoring and managing this bacterium to protect rice crops and ensure food security.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainpv. oryzae KACC 10331

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae KACC 10331
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae KACC 10331, complete genome.

Gene Summary

Adenine Count

897961 bp

Thymine Count

896113 bp

Guanine Count

1572666 bp

Cytosine Count

1574699 bp

Genome Length

4941439 bp

Protein-coding Genes

4656 genes

Non-Coding Genes

289 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-dependent receptorXOO_RS26105Not AvailableNegative3583987 - 358475328085.9
tonb-dependent receptorXOO_RS16565Not AvailablePositive3584801 - 358545124381.4
is5 family transposaseXOO_RS26110Not AvailablePositive3585625 - 358642330468.8
h-ns family nucleoid-associated regulatory proteinXOO_RS16575Not AvailableNegative3586456 - 358684814568.2
hypothetical proteinXOO_RS16580Not AvailableNegative3586939 - 358733114360.5
tonb-dependent receptorXOO_RS26115Not AvailableNegative3587558 - 35876684696.83
tonb-dependent receptorXOO_RS16585Not AvailablePositive3587700 - 358840426514.4
tonb-dependent receptorXOO_RS16590Not AvailableNegative3588439 - 358947637113.7
tonb-dependent receptorXOO_RS16600Not AvailablePositive3589515 - 359008520731.8
tonb-dependent receptorXOO_RS16610Not AvailablePositive3590260 - 359122033531.8

Displaying genes 3601 – 3610 of 4945 in total

Metabolites

1682 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1682 metabolites

Health Effects

No health effects information available for this bacterium.