Xanthomonas oryzae pv. oryzae KACC 10331

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae KACC 10331 is a Gram-negative, rod-shaped bacterium that serves as a pathogen of rice. This organism is classified as an aerobe, requiring oxygen for its metabolic processes. It possesses flagella, which contribute to its mobility, allowing it to move in its environment. In terms of its genetic structure, X. oryzae pv. oryzae KACC 10331 has a single replicon and is characterized by a double membrane system, typical of Gram-negative bacteria. It thrives in mesophilic temperature ranges, indicating that it prefers moderate temperatures for optimal growth. As a free-living organism, X. oryzae pv. oryzae interacts with its rice host in a biotic relationship that can lead to significant agricultural impacts. The bacterium is known for causing bacterial blight in rice, a disease that can severely affect crop yields. Understanding the traits of this pathogen, including its mobility and oxygen requirements, is crucial for developing effective management strategies to mitigate its impact on rice production. In summary, Xanthomonas oryzae pv. oryzae KACC 10331 is a notable pathogen with specific physiological traits that define its interaction with rice. Its ability to thrive in specific environmental conditions highlights the importance of monitoring and managing this bacterium to protect rice crops and ensure food security.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainpv. oryzae KACC 10331

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae KACC 10331
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae KACC 10331, complete genome.

Gene Summary

Adenine Count

897961 bp

Thymine Count

896113 bp

Guanine Count

1572666 bp

Cytosine Count

1574699 bp

Genome Length

4941439 bp

Protein-coding Genes

4656 genes

Non-Coding Genes

289 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rida family proteinXOO_RS09355Not AvailablePositive2013858 - 201420512445.9
sam-dependent methyltransferaseXOO_RS09360Not AvailableNegative2014368 - 201543840877.6
duf1295 domain-containing proteinXOO_RS09365Not AvailableNegative2015456 - 201623828712.9
duf2878 domain-containing proteinXOO_RS09370Not AvailableNegative2016235 - 201678019862.6
sam-dependent methyltransferaseXOO_RS09375Not AvailableNegative2016777 - 201807248117.6
duf1365 domain-containing proteinXOO_RS09380Not AvailableNegative2018069 - 201902837021.7
nad(p)/fad-dependent oxidoreductaseXOO_RS09385Not AvailableNegative2018953 - 202020346445.1
acyl-coa desaturaseXOO_RS09390Not AvailableNegative2020200 - 202119838153.6
anti-sigma factor domain-containing proteinXOO_RS09395Not AvailableNegative2021424 - 202226929510.5
sigma-70 family rna polymerase sigma factorXOO_RS09400Not AvailableNegative2022254 - 202281721059.1

Displaying genes 2071 – 2080 of 4945 in total

Metabolites

1682 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1682 metabolites

Health Effects

No health effects information available for this bacterium.