Shouchella clausii KSM-K16

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Shouchella

Description

Shouchella clausii KSM-K16 is characterized by having a single replicon, which is an important trait for its genomic organization. The strain is recorded under the accession NC_006582.1 in genetic databases, indicating its availability for further research and reference. Shouchella clausii is a notable bacterium within the microbiological community, recognized for its potential applications in various fields, particularly in probiotic research and the study of gut microbiota. The presence of a single replicon suggests a streamlined genetic architecture, which may contribute to its adaptability and efficiency in nutrient utilization or stress response. In terms of its biological implications, the simplicity of having one replicon can facilitate genetic studies and manipulations, thereby enhancing our understanding of its functional capabilities. As researchers explore the ecological roles of Shouchella clausii within its environment, insights into its interactions with other microorganisms and its contributions to the microbiome can emerge. This highlights the importance of studying such strains to unravel the complexities of microbial communities and their effects on health and disease.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusShouchella
SpeciesShouchella clausii
StrainKSM-K16

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Shouchella clausii KSM-K16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shouchella clausii KSM-K16, complete sequence.

Gene Summary

Adenine Count

1187771 bp

Thymine Count

1189975 bp

Guanine Count

961023 bp

Cytosine Count

965102 bp

Genome Length

4303871 bp

Protein-coding Genes

4164 genes

Non-Coding Genes

195 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorABC_RS20895Not AvailableNegative4215188 - 421606332253.0
citrate synthase/methylcitrate synthaseABC_RS20900Not AvailablePositive4216175 - 421726640040.0
trap transporter large permeaseABC_RS20905Not AvailableNegative4217346 - 421862044433.9
trap transporter small permeaseABC_RS20910Not AvailableNegative4218617 - 421909618065.7
trap transporter substrate-binding proteinABC_RS20915Not AvailableNegative4219093 - 422010337410.0
gntr family transcriptional regulatorABC_RS20920Not AvailableNegative4220228 - 422090826621.8
ureidoglycolate dehydrogenaseABC_RS20925Not AvailablePositive4221018 - 422205536866.6
methyl-accepting chemotaxis proteinABC_RS20930Not AvailablePositive4222405 - 422441472987.3
gnat family n-acetyltransferaseABC_RS20935Not AvailablePositive4224544 - 422504419231.1
sigma-70 family rna polymerase sigma factorABC_RS20940Not AvailablePositive4225209 - 422574820884.4

Displaying genes 4271 – 4280 of 4359 in total

Metabolites

1449 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1449 metabolites

Health Effects

No health effects information available for this bacterium.