Idiomarina loihiensis L2TR

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Idiomarina

Description

Idiomarina loihiensis L2TR is a specialized, aerobic, Gram-negative bacterium characterized by its bacilli shape and motility, which is facilitated by the presence of flagella. This organism thrives optimally at a temperature of 4°C, fitting within a mesophilic temperature range. It possesses a unique cellular structure, consisting of two membranes and a single replicon. As a free-living microorganism, Idiomarina loihiensis does not engage in pathogenic relationships, indicating it is not harmful to other organisms. Its habitat preferences suggest a specific ecological niche, likely associated with unique environmental conditions that support its growth and survival. The strain is cataloged under the accession number NC_006512.1, which provides a reference point for further research and study. The combination of its traits points to its potential role in biogeochemical processes in its specialized habitat, contributing to nutrient cycling in the environment it inhabits. Understanding the ecological functions of such bacteria can enhance our knowledge of microbial diversity and its implications for ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusIdiomarina
SpeciesIdiomarina loihiensis
StrainL2TR

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Idiomarina loihiensis L2TR
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature4
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Idiomarina loihiensis L2TR, complete sequence.

Gene Summary

Adenine Count

752994 bp

Thymine Count

750702 bp

Guanine Count

648501 bp

Cytosine Count

687121 bp

Genome Length

2839318 bp

Protein-coding Genes

2647 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorIL_RS10765Not AvailablePositive2230072 - 223091430467.9
fad-dependent oxidoreductaseIL_RS10770Not AvailableNegative2231089 - 223226743375.1
2-octaprenyl-6-methoxyphenyl hydroxylaseIL_RS10775Not AvailableNegative2232264 - 223343042913.4
xaa-pro aminopeptidaseIL_RS10780Not AvailableNegative2233412 - 223473448950.7
upf0149 family proteinIL_RS10785Not AvailableNegative2234759 - 223532521068.7
cell division protein zapaIL_RS10790Not AvailablePositive2235459 - 223577011830.1
Ncrna_class:otherNot AvailableNot AvailablePositive2235806 - 2235990Not Available
amidohydrolase family proteinIL_RS10795Not AvailableNegative2235994 - 223756558976.9
5-formyltetrahydrofolate cyclo-ligaseIL_RS10800Not AvailablePositive2237616 - 223820322568.3
ribose-5-phosphate isomerase rpiaIL_RS10805Not AvailablePositive2238277 - 223894823817.5

Displaying genes 2161 – 2170 of 2719 in total

Metabolites

1799 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1799 metabolites

Health Effects

No health effects information available for this bacterium.