Idiomarina loihiensis L2TR

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Idiomarina

Description

Idiomarina loihiensis L2TR is a specialized, aerobic, Gram-negative bacterium characterized by its bacilli shape and motility, which is facilitated by the presence of flagella. This organism thrives optimally at a temperature of 4°C, fitting within a mesophilic temperature range. It possesses a unique cellular structure, consisting of two membranes and a single replicon. As a free-living microorganism, Idiomarina loihiensis does not engage in pathogenic relationships, indicating it is not harmful to other organisms. Its habitat preferences suggest a specific ecological niche, likely associated with unique environmental conditions that support its growth and survival. The strain is cataloged under the accession number NC_006512.1, which provides a reference point for further research and study. The combination of its traits points to its potential role in biogeochemical processes in its specialized habitat, contributing to nutrient cycling in the environment it inhabits. Understanding the ecological functions of such bacteria can enhance our knowledge of microbial diversity and its implications for ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusIdiomarina
SpeciesIdiomarina loihiensis
StrainL2TR

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Idiomarina loihiensis L2TR
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature4
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Idiomarina loihiensis L2TR, complete sequence.

Gene Summary

Adenine Count

752994 bp

Thymine Count

750702 bp

Guanine Count

648501 bp

Cytosine Count

687121 bp

Genome Length

2839318 bp

Protein-coding Genes

2647 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system protein nIL_RS10360Not AvailableNegative2159892 - 216063827210.8
type ii secretion system protein mIL_RS10365Not AvailableNegative2160635 - 216115319496.3
type ii secretion system protein gsplIL_RS10370Not AvailableNegative2161150 - 216237044967.7
type ii secretion system minor pseudopilin gspkIL_RS10375Not AvailableNegative2162374 - 216336036200.9
type ii secretion system minor pseudopilin gspjIL_RS10380Not AvailableNegative2163350 - 216403325411.0
type ii secretion system minor pseudopilin gspiIL_RS10385Not AvailableNegative2164023 - 216441514540.3
type ii secretion system minor pseudopilin gsphIL_RS10390Not AvailableNegative2164418 - 216498421445.5
type ii secretion system major pseudopilin gspgIL_RS10395Not AvailableNegative2164959 - 216539616123.0
type ii secretion system inner membrane protein gspfIL_RS10400Not AvailableNegative2165399 - 216662545054.9
type ii secretion system atpase gspeIL_RS10405Not AvailableNegative2166629 - 216811354497.5

Displaying genes 2081 – 2090 of 2719 in total

Metabolites

1799 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1799 metabolites

Health Effects

No health effects information available for this bacterium.