Lactobacillus johnsonii NCC 533

Gram-positiveRodNon-motileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Lactobacillus

Description

Lactobacilli produce lactic acid and are used for many different things, including yogurt production and the maintenance of healthy intestinal microflora. Lactobacilli are commonly associated with the gastrointestinal tract of humans. The genome of the Lactobacillus plantarum has been sequenced and the genomes of several other Lactobacilli are underway. The goal of researchers is to better understand the roles, capabilities, and interactions of Lactobacilli.The genome of Lactobacillus plantarum has been sequenced. The genome is 3,308,274 bp long with 3,052 open-reading frames, and a G+C content of 44.5%. L. plantarum occupies many different niches in the environment including the human gastrointestinal tract. L. plantarum is very ecologically flexible as is reflected in the fact that it has one of the largest genomes of any of the lactic acid bacteria.The genome of Lactobacillus bulgaricus, which is currently in progress, is about 2.3 Mbp long with a G+C content of 50%. L. bulgaricus is one of the two bacteria required for the production of fermented milk and yogurt. The complete sequence of this genome will provide better understanding and control of this bacterium in the fermentation process.Lactobacilli are rod-shaped, Gram-positive, fermentative, organotrophs. They are usually straight, although they can form spiral or coccobacillary forms under certain conditions. They are often found in pairs or chains of varying length. Lactobacilli are classified as lactic acid bacteria, and derive almost all of their energy from the conversion of glucose to lactate during homolactic fermentation. In this process 85-90% of the sugar utilized is converted to lactic acid. They generate ATP by nonoxidative substrate-level phosphorylation.Lactobacilli are commonly associated with plant herbage. They have a generation time ranging from 25 minutes to several hundred minutes, and grow optimally between the temperatures of 30 and 40 degrees Celsius, although thermophilic strains can be comfortable at temperatures as high as 45 degrees Celsius. They are also commonly associated with the gastrointestinal tract of animals and humans. As natural GI microflora they are believed to perform several beneficial roles including immunomodulation, interference with enteric pathogens, and maintenance of healthy intestinal microflora. Lactobacillus gasseri appears to be the main species of lactobacilli that inhabits the human gastrointestinal tract. (From http://microbewiki.kenyon.edu/index.php/Lactobacillus) (MicrobeWiki: Lactobacillus)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLactobacillus
SpeciesLactobacillus johnsonii
StrainNCC 533

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Lactobacillus johnsonii NCC 533
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementChains
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Lactobacillus johnsonii NCC 533


Gene Summary

Adenine Count

654687 bp

Thymine Count

648299 bp

Guanine Count

348685 bp

Cytosine Count

341005 bp

Genome Length

1992676 bp

Protein-coding Genes

1725 genes

Non-Coding Genes

207 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+327847 - 327860Not Available
Putative integraseLJ_RS01495Not Available-327894 - 32906945629.1
Putative superinfection immunity proteinLJ_RS01500Not Available-329225 - 32974918971.0
Hypothetical proteinLJ_RS01505Not Available-329842 - 33026115356.9
Hypothetical proteinLJ_RS01510Not Available-330483 - 33126829972.7
Hypothetical proteinLJ_RS01515Not Available-331240 - 33169817888.8
Putative repressorLJ_RS01520Not Available-331779 - 33220116543.2
Putative repressorLJ_RS01525Not Available-332205 - 33255813296.9
Putative cro repressorLJ_RS01530Not Available+332731 - 3329347595.26
Putative antirepressorLJ_RS01535Not Available+332972 - 33372128711.4

Displaying genes 1 – 10 of 1932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1464 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 1464 metabolites