Onion yellows phytoplasma OY-M

Gram-positiveCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Mycoplasmatota

Class

Mollicutes

Order

Acholeplasmatales

Family

Acholeplasmataceae

Genus

Candidatus Phytoplasma

Description

Phytoplasmas have diverged from Gram-positive bacteria, and belong to the genus Phytoplasma within the class Mollicutes. They are plant pathogens, causing severe symptoms such as stunting, phyllody, witches broom, yellowing, and yield losses in over 300 economically important plant species worldwide. Transmission of phytoplasmas to plants occurs when insects feed from plant phloem. The bacteria are introduced into plant phloem with insect saliva. In plants, phytoplasmas remain restricted to the phloem tissue where they systemically spread throughout the plant. They are among the smallest self-replicating organisms known, and are characterized by a small genome with a low G+C content, and a lack of a firm cell wall.Onion yellows phytoplasma has 2 extrachromosomal elements, EcOYM and pOYM. (HAMAP: ONYPE)

Taxonomy

KingdomBacillati
PhylumMycoplasmatota
ClassMollicutes
OrderAcholeplasmatales
FamilyAcholeplasmataceae
GenusCandidatus Phytoplasma
SpeciesOnion yellows phytoplasma
StrainOY-M

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Onion yellows phytoplasma OY-M
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Onion yellows phytoplasma OY-M

Accession NumberNC_005303.2

Gene Summary

Adenine Count

310963 bp

Thymine Count

305309 bp

Guanine Count

117861 bp

Cytosine Count

118956 bp

Genome Length

853092 bp

Protein-coding Genes

851 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycosyltransferasePAM_RS00060Not Available+10428 - 1167548070.6
30s ribosomal protein s6PAM_RS00070Q6YRK5+12222 - 1250911377.9
single-stranded dna-binding proteinPAM_RS00075Q6G7V6+12524 - 1286812778.2
30s ribosomal protein s18PAM_RS00080Q6YRK3+13006 - 132459582.96
50s ribosomal protein l9PAM_RS00085Q6YRK2+13340 - 1588996801.0
replicative dna helicasePAM_RS00090P37469+15886 - 1722951503.1
peptide chain release factor 1PAM_RS00095Q6YRK0+17300 - 1835540013.3
l-threonylcarbamoyladenylate synthasePAM_RS00100P39153+18448 - 1900521028.3
dna polymerase iii subunit deltaPAM_RS00105Not Available-19044 - 2002738909.1
ribosome biogenesis gtp-binding protein yiha/ysxcPAM_RS00110A9NFM5+20275 - 2086522562.9

Displaying genes 11 – 20 of 891 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

12 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003810propanoyl phosphateC3H5O5PChemical structure of propanoyl phosphate121-69-7
Average152.043Da
Monoisotopic151.9885574Da

Displaying 1–10 of 12 metabolites