Onion yellows phytoplasma OY-M

Gram-positiveCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Mycoplasmatota

Class

Mollicutes

Order

Acholeplasmatales

Family

Acholeplasmataceae

Genus

Candidatus Phytoplasma

Description

Onion yellows phytoplasma OY-M is a coccoid, aerobic microorganism classified as Gram-positive. It is associated with host plants, specifically linked to onion crops, and is characterized by its lack of mobility, which is a typical trait of phytoplasmas. OY-M possesses one replicon and a single membrane, indicating a simplified cellular structure common to these organisms. This phytoplasma thrives in mesophilic temperature ranges, which suggests that it prefers moderate environmental conditions for growth and activity. Despite being pathogenic in nature, OY-M does not exhibit pathogenicity, meaning it does not cause disease in its host, which is an interesting aspect of its biology. Notably, the presence of flagella in the context of OY-M is intriguing; while it is non-motile, the presence of flagella may indicate a vestigial structure or a role in interaction with the host environment. The accession number NC_005303.2 provides a reference for further genetic and genomic studies related to OY-M. From an ecological perspective, the non-pathogenic nature of Onion yellows phytoplasma OY-M suggests that it may play a role in the microbiome associated with onion plants, potentially influencing plant health and interactions with other microorganisms. Understanding the traits of OY-M can inform agricultural practices and contribute to the management of onion crops, especially in maintaining a balanced microbial ecosystem.

Taxonomy

KingdomBacillati
PhylumMycoplasmatota
ClassMollicutes
OrderAcholeplasmatales
FamilyAcholeplasmataceae
GenusCandidatus Phytoplasma
SpeciesOnion yellows phytoplasma
StrainOY-M

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Onion yellows phytoplasma OY-M
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Onion yellows phytoplasma OY-M DNA, complete genome.

Gene Summary

Adenine Count

310963 bp

Thymine Count

305309 bp

Guanine Count

117861 bp

Cytosine Count

118956 bp

Genome Length

853092 bp

Protein-coding Genes

851 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine--trna ligasePAM_RS00790P60918Positive151153 - 15242148854.9
aspartate--trna ligasePAM_RS00795Q6YR88Positive152425 - 15418567524.5
trna lysidine(34) synthetase tilsPAM_RS00800Q6YR87Positive154195 - 15550550655.2
atp-dependent zinc metalloprotease ftshPAM_RS00805Q2NIN5Positive155627 - 15765175362.9
rlua family pseudouridine synthasePAM_RS00810Q45480Positive157887 - 15879834548.1
abc transporter atp-binding proteinPAM_RS00815Not AvailablePositive158917 - 15961124997.1
metq/nlpa family abc transporter substrate-binding proteinPAM_RS00820Not AvailablePositive159694 - 16073739998.3
abc transporter permease subunitPAM_RS00825Not AvailablePositive160750 - 16145126840.6
cyclic-di-amp receptorPAM_RS00830P37538Positive161572 - 16189511884.5
30s ribosomal protein s15PAM_RS00835Q6YR80Positive161971 - 1621958619.38

Displaying genes 151 – 160 of 891 in total

Metabolites

25 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003810propanoyl phosphateC3H5O5PChemical structure of propanoyl phosphate121-69-7
Average152.043Da
Monoisotopic151.9885574Da

Displaying 1–10 of 25 metabolites

Health Effects

No health effects information available for this bacterium.