Rhizobium etli CFN 42

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium etli CFN 42 is a Gram-negative, rod-shaped bacterium that plays a crucial role in the symbiotic relationship with the leguminous plant Phaseolus vulgaris, commonly known as the common bean. This bacterium is categorized as an aerobe, indicating its requirement for oxygen to grow and thrive. It possesses flagella, which contributes to its mobility, allowing it to navigate its host environment effectively. R. etli CFN 42 exhibits a mesophilic temperature range, thriving optimally in moderate temperatures typical of its natural habitat. The bacterium is characterized by a complex genomic structure with three replicons and is surrounded by two membranes, a feature typical of Gram-negative bacteria. Importantly, R. etli CFN 42 does not form spores, which suggests a continuous growth strategy in its symbiotic association rather than reliance on sporulation for survival in fluctuating environments. The biotic relationship between R. etli CFN 42 and Phaseolus vulgaris is particularly noteworthy, as it facilitates nitrogen fixation, a critical process that enhances soil fertility and supports plant growth. This symbiosis not only benefits the host plant but also contributes to the overall health of the ecosystem by improving nutrient cycling. The genetic information of R. etli CFN 42 can be accessed through multiple accession numbers, including NC_004041.2, NC_007762.1, and NC_007766.1, which provide valuable resources for further research into its biological functions and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium etli
StrainCFN42

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium etli CFN 42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Phaseolus vulgaris
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Rhizobium etli CFN 42


Gene Summary

Adenine Count

40943 bp

Thymine Count

40628 bp

Guanine Count

56305 bp

Cytosine Count

56353 bp

Genome Length

194229 bp

Protein-coding Genes

204 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two-component system vira-like sensor kinaseRHE_RS21305Not AvailablePositive45179 - 4768992340.6
type iv secretion system lytic transglycosylase virb1RHE_RS21310Not AvailablePositive47889 - 4862626685.4
type iv secretion system protein virb3RHE_RS21315Not AvailablePositive48766 - 4909211699.6
virb4 family type iv secretion/conjugal transfer atpaseRHE_RS21320Not AvailablePositive49092 - 5146187841.7
pilin minor subunit virb5RHE_RS21325Not AvailablePositive51478 - 5214022952.3
type iv secretion system proteinRHE_RS21330Not AvailablePositive52239 - 5312632043.5
type iv secretion system lipoprotein virb7RHE_RS31950Not AvailablePositive53156 - 533235979.33
type iv secretion system protein virb8RHE_RS21335Not AvailablePositive53310 - 5402326068.0
p-type conjugative transfer protein virb9RHE_RS21340Not AvailablePositive54020 - 5490132159.1
type iv secretion system protein virb10RHE_RS21345Not AvailablePositive54898 - 5600139268.3

Displaying genes 51 – 60 of 1185 in total

Metabolites

1702 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1702 metabolites

Health Effects

No health effects information available for this bacterium.