Rhizobium etli CFN 42

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium etli CFN 42 is a Gram-negative, rod-shaped bacterium that plays a crucial role in the symbiotic relationship with the leguminous plant Phaseolus vulgaris, commonly known as the common bean. This bacterium is categorized as an aerobe, indicating its requirement for oxygen to grow and thrive. It possesses flagella, which contributes to its mobility, allowing it to navigate its host environment effectively. R. etli CFN 42 exhibits a mesophilic temperature range, thriving optimally in moderate temperatures typical of its natural habitat. The bacterium is characterized by a complex genomic structure with three replicons and is surrounded by two membranes, a feature typical of Gram-negative bacteria. Importantly, R. etli CFN 42 does not form spores, which suggests a continuous growth strategy in its symbiotic association rather than reliance on sporulation for survival in fluctuating environments. The biotic relationship between R. etli CFN 42 and Phaseolus vulgaris is particularly noteworthy, as it facilitates nitrogen fixation, a critical process that enhances soil fertility and supports plant growth. This symbiosis not only benefits the host plant but also contributes to the overall health of the ecosystem by improving nutrient cycling. The genetic information of R. etli CFN 42 can be accessed through multiple accession numbers, including NC_004041.2, NC_007762.1, and NC_007766.1, which provide valuable resources for further research into its biological functions and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium etli
StrainCFN42

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium etli CFN 42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Phaseolus vulgaris
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Rhizobium etli CFN 42 plasmid p42d, complete sequence.

Gene Summary

Adenine Count

79030 bp

Thymine Count

77580 bp

Guanine Count

107986 bp

Cytosine Count

106658 bp

Genome Length

371254 bp

Protein-coding Genes

362 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinRHE_RS21100Not AvailablePositive302 - 125835921.7
site-specific integraseRHE_RS21105Not AvailableNegative1339 - 249641740.2
hypothetical proteinRHE_RS21110Not AvailablePositive3036 - 332310709.8
his-xaa-ser system radical sam maturase hxsbRHE_RS21115Not AvailablePositive3320 - 472653472.8
his-xaa-ser system radical sam maturase hxscRHE_RS21120Not AvailablePositive4723 - 580540421.4
his-xaa-ser repeat protein hxsaRHE_RS21125Not AvailablePositive5802 - 645522693.9
hypothetical proteinRHE_RS21130Not AvailablePositive6480 - 764041595.1
duf4236 domain-containing proteinRHE_RS21135Not AvailableNegative7634 - 955667856.9
is21-like element isrel16 family helper atpase istbRHE_RS21140Not AvailableNegative10044 - 1078127824.3
is21-like element isrel16 family transposaseRHE_RS21145Not AvailableNegative10793 - 1231957867.2

Displaying genes 1 – 10 of 1185 in total

Metabolites

1827 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 1827 metabolites

Health Effects

No health effects information available for this bacterium.