Xanthomonas citri pv. citri str. 306

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas citri pv. citri str. 306 is a Gram-negative, rod-shaped bacterium known primarily for its role as a plant pathogen. This bacterium possesses true flagella, which facilitate its movement across various surfaces. It is commonly found on the surfaces of fruits and leaves, specifically in habitats associated with its host plants. The primary hosts of Xanthomonas citri pv. citri str. 306 include Mangifera indica (mango), Citrus species, and Citrus x paradisi (grapefruit). It is notably associated with significant health effects on these plants, leading to diseases such as citrus canker and black spot. These diseases can severely impact the agricultural production of citrus fruits, making Xanthomonas citri pv. citri an important pathogen in the field of plant microbiology. The strain is characterized by having three replicons, which are segments of its genetic material that contribute to its adaptability and pathogenicity. Notable accession numbers for this strain include NC_003919.1, NC_003921.3, and NC_003922.1, which provide access to its genomic information for further study. Understanding the biology and ecology of Xanthomonas citri pv. citri str. 306, particularly its habitat preferences and disease manifestations, is crucial for developing effective management strategies. This knowledge can aid in mitigating the impact of citrus canker and black spot on economically significant crops, highlighting the importance of research in agricultural microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas citri
Strainpv. citri 306

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas citri pv. citri str. 306
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatfruit surfaces; leaf surface; leaf surfaces
Biotic relationshipNot Available
Host(s)Mangifera indica, Citrus, Citrus x paradisi
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas citri pv. citri str. 306 plasmid pXAC64, complete

Gene Summary

Adenine Count

12212 bp

Thymine Count

12852 bp

Guanine Count

20030 bp

Cytosine Count

19826 bp

Genome Length

64920 bp

Protein-coding Genes

68 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhomboid family intramembrane serine proteaseXAC_RS00105Not AvailablePositive21972 - 2266425050.3
duf1820 family proteinXAC_RS00110Not AvailablePositive22773 - 2309312111.5
d-2-hydroxyacid dehydrogenase family proteinXAC_RS00115Not AvailablePositive23093 - 2408535501.6
s41 family peptidaseXAC_RS00120Not AvailableNegative24251 - 2577752876.5
murein hydrolase activator envc family proteinXAC_RS00125Not AvailableNegative25882 - 2718046474.4
hypothetical proteinXAC_RS00130Not AvailablePositive27278 - 2793422172.2
m28 family metallopeptidaseXAC_RS00135Not AvailablePositive28096 - 2989264177.9
pepsy domain-containing proteinXAC_RS00140Not AvailableNegative30212 - 3065515716.4
glycoside hydrolase family 5 proteinXAC_RS00145Not AvailableNegative30948 - 3208140875.2
Ncrna_class:otherNot AvailableNot AvailablePositive32641 - 32713Not Available

Displaying genes 151 – 160 of 4557 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Citrus cankerCausesPMC8042644
CankerCausesPMC8042644
Black spotCausesPMC8042644
Citrus bacterial cankerCausesPMC3407170
Citrus cankerCausesPMC9009655
Citrus canker aCausesPMC9009655

Displaying health effects 1 – 6 of 6 in total