Ruegeria pomeroyi DSS-3

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria pomeroyi DSS-3 is a Gram-negative, aerobic bacterium characterized by its bacilli shape and mobility. It is a heterotrophic organism that thrives in aquatic environments. The strain DSS-3 is mesophilic, indicating it prefers moderate temperature ranges for growth. This bacterium is notable for being free-living, which means it does not rely on a host organism for survival. With a single replicon, Ruegeria pomeroyi DSS-3 can efficiently manage its genetic information, contributing to its adaptability in various aquatic habitats. The strain is cataloged under the accession number NC_003911.12. The ecological relevance of Ruegeria pomeroyi DSS-3 lies in its role in marine ecosystems. As a heterotroph, it contributes to the cycling of organic matter in aquatic environments, potentially influencing nutrient dynamics and the overall health of marine ecosystems. Its mobility may also play a significant role in its ability to colonize different niches within these habitats, further enhancing its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria pomeroyi
StrainDSS-3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Ruegeria pomeroyi DSS-3, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yaii/yqxd family proteinSPO_RS19420Q5LLU4Negative4042156 - 404262016393.6
si-specific nad(p)(+) transhydrogenaseSPO_RS19425P66007Negative4043001 - 404442852841.5
s-formylglutathione hydrolaseSPO_RS19430A1AXZ2Negative4044437 - 404527030019.1
peptidase tSPO_RS19435Q8CXN0Positive4045444 - 404668244329.9
alpha/beta fold hydrolaseSPO_RS19440Not AvailablePositive4046686 - 404754330722.5
ornithine cyclodeaminase family proteinSPO_RS19445O54983Positive4047540 - 404848733182.9
dead/deah box helicaseSPO_RS19450Q0D8N0Positive4048625 - 405067372720.1
4-hydroxy-tetrahydrodipicolinate reductaseSPO_RS19455Q5LLT7Negative4050677 - 405148627983.7
30s ribosome-binding factor rbfaSPO_RS19460Q5LLT6Positive4051575 - 405197015002.1
phosphodiester glycosidase family proteinSPO_RS19465Not AvailablePositive4051970 - 405270426275.2

Displaying genes 3931 – 3940 of 4001 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.