Ruegeria pomeroyi DSS-3

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria pomeroyi DSS-3 is a Gram-negative, aerobic bacterium characterized by its bacilli shape and mobility. It is a heterotrophic organism that thrives in aquatic environments. The strain DSS-3 is mesophilic, indicating it prefers moderate temperature ranges for growth. This bacterium is notable for being free-living, which means it does not rely on a host organism for survival. With a single replicon, Ruegeria pomeroyi DSS-3 can efficiently manage its genetic information, contributing to its adaptability in various aquatic habitats. The strain is cataloged under the accession number NC_003911.12. The ecological relevance of Ruegeria pomeroyi DSS-3 lies in its role in marine ecosystems. As a heterotroph, it contributes to the cycling of organic matter in aquatic environments, potentially influencing nutrient dynamics and the overall health of marine ecosystems. Its mobility may also play a significant role in its ability to colonize different niches within these habitats, further enhancing its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria pomeroyi
StrainDSS-3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Ruegeria pomeroyi DSS-3, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
benzoyl-coa 2,3-epoxidase subunit boxbSPO_RS18775Q9AIX7Positive3912258 - 391370955389.7
hypothetical proteinSPO_RS23135Not AvailablePositive3913777 - 39140078198.02
benzoyl-coa 2,3-epoxidase subunit boxaSPO_RS18785Q9AIX6Positive3914004 - 391518843569.8
helix-turn-helix transcriptional regulatorSPO_RS18790Q67N09Positive3915274 - 391619133244.8
substrate-binding domain-containing proteinSPO_RS18795Not AvailablePositive3916383 - 391755842225.3
abc transporter atp-binding proteinSPO_RS18800P0A194Positive3917629 - 391839327384.0
abc transporter atp-binding proteinSPO_RS18805Not AvailablePositive3918386 - 391910826198.0
branched-chain amino acid abc transporter permeaseSPO_RS18810Not AvailablePositive3919169 - 392020036167.5
branched-chain amino acid abc transporter permeaseSPO_RS18815Q58666Positive3920197 - 392124937147.0
duf3095 domain-containing proteinSPO_RS18820Not AvailableNegative3921246 - 392239141817.1

Displaying genes 3801 – 3810 of 4001 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.