Ruegeria pomeroyi DSS-3

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria pomeroyi DSS-3 is a Gram-negative, aerobic bacterium characterized by its bacilli shape and mobility. It is a heterotrophic organism that thrives in aquatic environments. The strain DSS-3 is mesophilic, indicating it prefers moderate temperature ranges for growth. This bacterium is notable for being free-living, which means it does not rely on a host organism for survival. With a single replicon, Ruegeria pomeroyi DSS-3 can efficiently manage its genetic information, contributing to its adaptability in various aquatic habitats. The strain is cataloged under the accession number NC_003911.12. The ecological relevance of Ruegeria pomeroyi DSS-3 lies in its role in marine ecosystems. As a heterotroph, it contributes to the cycling of organic matter in aquatic environments, potentially influencing nutrient dynamics and the overall health of marine ecosystems. Its mobility may also play a significant role in its ability to colonize different niches within these habitats, further enhancing its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria pomeroyi
StrainDSS-3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Ruegeria pomeroyi DSS-3, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic ring-hydroxylating dioxygenase subunit alphaSPO_RS18675Not AvailableNegative3889517 - 389065942589.5
nad(p)/fad-dependent oxidoreductaseSPO_RS18680Q5L2G3Positive3890868 - 389211845551.6
Trna-argNot AvailableNot AvailablePositive3892517 - 3892593Not Available
laci family dna-binding transcriptional regulatorSPO_RS18690Q9I1F6Positive3892710 - 389373537386.4
winged helix-turn-helix domain-containing proteinSPO_RS18695P75843Positive3893740 - 389495446443.4
hpch/hpai aldolase/citrate lyase family proteinSPO_RS18700A8A876Negative3895045 - 389581527115.6
pyridoxal-dependent decarboxylaseSPO_RS18705P17770Negative3895880 - 389728952722.8
3,4-dihydroxyphenylacetate 2,3-dioxygenaseSPO_RS18710P31003Negative3897311 - 389829137365.4
homoprotocatechuate degradation operon regulator hparSPO_RS18715P0DPR8Positive3898438 - 389887516301.8
cupin domain-containing proteinSPO_RS18720O86041Positive3899360 - 390039437775.0

Displaying genes 3781 – 3790 of 4001 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.