Ruegeria pomeroyi DSS-3

Gram-negativeBacilliMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria pomeroyi DSS-3 is a Gram-negative, aerobic bacterium characterized by its bacilli shape and mobility. It is a heterotrophic organism that thrives in aquatic environments. The strain DSS-3 is mesophilic, indicating it prefers moderate temperature ranges for growth. This bacterium is notable for being free-living, which means it does not rely on a host organism for survival. With a single replicon, Ruegeria pomeroyi DSS-3 can efficiently manage its genetic information, contributing to its adaptability in various aquatic habitats. The strain is cataloged under the accession number NC_003911.12. The ecological relevance of Ruegeria pomeroyi DSS-3 lies in its role in marine ecosystems. As a heterotroph, it contributes to the cycling of organic matter in aquatic environments, potentially influencing nutrient dynamics and the overall health of marine ecosystems. Its mobility may also play a significant role in its ability to colonize different niches within these habitats, further enhancing its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria pomeroyi
StrainDSS-3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Ruegeria pomeroyi DSS-3, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pitrilysin family proteinSPO_RS17075P55679Negative3573049 - 357439249323.2
duf3035 domain-containing proteinSPO_RS17080Not AvailableNegative3574471 - 357498918241.5
signal peptidase iiSPO_RS17085Q8YNI8Negative3575040 - 357551317383.6
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseSPO_RS17090Q5LN38Negative3575513 - 357710255780.6
heparinase ii/iii family proteinSPO_RS17095Not AvailableNegative3577125 - 357884662632.5
rsmb/nop family class i sam-dependent rna methyltransferaseSPO_RS17100Q9KVU5Negative3578934 - 358020544874.0
duf1674 domain-containing proteinSPO_RS17105Not AvailablePositive3580300 - 35804826685.83
benzoate/h(+) symporter bene family transporterSPO_RS17110P76103Positive3580570 - 358174239517.2
lysr family transcriptional regulatorSPO_RS17115P24734Negative3581739 - 358260231019.5
gamma-butyrobetaine dioxygenaseSPO_RS17120Q98KK0Positive3582703 - 358383941144.4

Displaying genes 3461 – 3470 of 4001 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.